Miyakogusa Predicted Gene

Lj1g3v3716230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3716230.1 tr|G7LBA0|G7LBA0_MEDTR Transcription factor
tfiiib component OS=Medicago truncatula GN=MTR_8g091830
,56.76,0.0000000002,seg,NULL,
NODE_55871_length_750_cov_61.667999.path2.1
         (198 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g067250.1 | hypothetical protein | HC | chr4:25376733-2538...    70   2e-12
Medtr8g091830.1 | myb-like DNA-binding domain protein | HC | chr...    52   4e-07
Medtr8g091830.2 | myb-like DNA-binding domain protein | HC | chr...    48   5e-06

>Medtr4g067250.1 | hypothetical protein | HC |
           chr4:25376733-25381638 | 20130731
          Length = 580

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 49/77 (63%)

Query: 1   MDAFDDILSGAPAPRARRGSKFMPKAKLKQLPQKEISASEHATSSKDGENVPVASSATST 60
           MD FDDIL   P   AR  +KF PK K KQ  +KEISASEHATSS DG+N+ VAS+ T T
Sbjct: 76  MDLFDDILLEVPPAPARPSAKFAPKVKSKQSLRKEISASEHATSSVDGKNMHVASTPTVT 135

Query: 61  KSGGILNECHDAVASTL 77
           KS    N  +D   S L
Sbjct: 136 KSIRDTNLDNDGAESEL 152


>Medtr8g091830.1 | myb-like DNA-binding domain protein | HC |
           chr8:38336451-38328057 | 20130731
          Length = 837

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 120 ETNLNNGAKQPIHPXXXXXXXXXXXXQ-STTNSSISRMEEPPKSGEGSIPDSNKNLEHID 178
           + N+NN   Q +HP              STT+S+I   +E P +GEGS  DSNK+LE ID
Sbjct: 60  DINVNNVTAQSVHPANAVENVLNNAAAVSTTDSTIGSNKELPTNGEGSFLDSNKSLEVID 119

Query: 179 NSVPVIPDANFKSA 192
           NS+ V  +A FKSA
Sbjct: 120 NSLEVSLNAGFKSA 133


>Medtr8g091830.2 | myb-like DNA-binding domain protein | HC |
           chr8:38336712-38329855 | 20130731
          Length = 758

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 120 ETNLNNGAKQPIHPXXXXXXXXXXXXQ-STTNSSISRMEEPPKSGEGSIPDSNKNLEHID 178
           + N+NN   Q +HP              STT+S+I   +E P +GEGS  DSNK+LE ID
Sbjct: 60  DINVNNA--QSVHPANAVENVLNNAAAVSTTDSTIGSNKELPTNGEGSFLDSNKSLEVID 117

Query: 179 NSVPVIPDANFKSA 192
           NS+ V  +A FKSA
Sbjct: 118 NSLEVSLNAGFKSA 131