Miyakogusa Predicted Gene

Lj1g3v3690280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3690280.1 CUFF.31070.1
         (260 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g033120.1 | surfeit locus protein 2 (SURF2) | HC | chr7:11...   248   4e-66

>Medtr7g033120.1 | surfeit locus protein 2 (SURF2) | HC |
           chr7:11699339-11704098 | 20130731
          Length = 271

 Score =  248 bits (633), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 145/265 (54%), Positives = 154/265 (58%), Gaps = 7/265 (2%)

Query: 1   MATTEEPPK-KEGSNLLGSPTFTELENGRFKCVETGHEVLSKDIPSYSNSKKCRLGLIDF 59
           + TTEE  K KEGSNLLGSP F E+ NGR KCVETGHEVLSKDIP YSNSKKCRLGLIDF
Sbjct: 9   VVTTEESVKQKEGSNLLGSPKFKEIGNGRLKCVETGHEVLSKDIPFYSNSKKCRLGLIDF 68

Query: 60  ALSNHKPPLNMFNQDPLYRSKLICKLTGDNVNKSEEHIWKHMSGKRFLNKLEQQEEGKLS 119
           AL+N+K PLNMFNQDPL RSKLICKLTG  VNKSEEHIWKHM+GKRFLNKLEQQEEG  +
Sbjct: 69  ALANNKSPLNMFNQDPLCRSKLICKLTGHKVNKSEEHIWKHMTGKRFLNKLEQQEEGMEN 128

Query: 120 CHDGMXXXXXXXXXXXXANGGQXXXXXXXXXXXXXXXXXXXVEEIISEVRKXXXXXXXXX 179
                            A   +                   VEEIISEVRK         
Sbjct: 129 GES--LQEQQSVDCGTKAEMKKKNKQKNKKKKKTKKKKDKRVEEIISEVRKSSNEETDTE 186

Query: 180 XXXFWMPPVXXXXXXXXXXXX----XXXXLXXXXXXXXGDVIDGAADEDCKESEELSSRT 235
              FWMPP                              GDVIDG AD DCKESEELSSRT
Sbjct: 187 EEDFWMPPAGERWDNDDGGDRWCSDSGSDSESEPEAEEGDVIDGDADVDCKESEELSSRT 246

Query: 236 KRMSIEVGPXXXXXXXXXXXXNHQT 260
           KR+SIEVGP            N +T
Sbjct: 247 KRLSIEVGPSSFASRKKKSKKNDET 271