Miyakogusa Predicted Gene

Lj1g3v3557030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3557030.1 tr|F2EFC3|F2EFC3_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,35.12,0.00000000000001,LOW-TEMPERATURE VIABILITY PROTEIN
LTV1-RELATED,NULL; coiled-coil,NULL; seg,NULL,CUFF.30856.1
         (513 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g022890.1 | Low temperature viability protein, putative | ...   503   e-142

>Medtr4g022890.1 | Low temperature viability protein, putative | HC
           | chr4:7694797-7689371 | 20130731
          Length = 514

 Score =  503 bits (1295), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 283/524 (54%), Positives = 336/524 (64%), Gaps = 24/524 (4%)

Query: 2   GKKKFIDKKNAATFQLIARDSSDPAFSTSDRVFIRVDNNPLS--TXXXXXXXXXXXXXXX 59
           GKKKFIDKKN+ TF L+ARDS+DP ++ SDRVF+RVDNNPLS  +               
Sbjct: 3   GKKKFIDKKNSVTFHLMARDSTDPVYTESDRVFVRVDNNPLSADSIFADSPDDPDAEFDT 62

Query: 60  XXXXXXXXXXXXVRREILELGFPDDGYNYLNHMREIKNTGGGSAFFHNPKFKLQHVPHDI 119
                       VR+EILELGFPDDGYNYL H+REIKN+GGGS FF NPKFKL+HV +D+
Sbjct: 63  EYAQDSGILSDEVRKEILELGFPDDGYNYLTHLREIKNSGGGSNFFTNPKFKLEHV-NDV 121

Query: 120 KAYDASRLPISEADREPEENTIYTVAAKTTSIRVQKAIDPEVAALLDDTDLSRFGSD-ED 178
           KAYDASR+ + E D EPEEN +Y VA+ T ++RVQKA+DPEVAALLDD+D SRFGSD ED
Sbjct: 122 KAYDASRVRVKEVDEEPEENILYNVASSTANVRVQKAVDPEVAALLDDSDASRFGSDVED 181

Query: 179 LEEDFVVQANLGEDENDEDKELICNGMNFSEESMIARSKKNAQVLQDFDHSKVIDDCGSL 238
           LEEDFVV+ANL ED +DE++  + NGMNF+EESM  R+  NA +LQ   ++ V DDCG  
Sbjct: 182 LEEDFVVKANLCEDVDDEEEVHVRNGMNFTEESM-NRTLNNAHILQGSAYATVADDCGPS 240

Query: 239 DGVTNGVAGEDRAGDKPRARRLLDDQFDLLECQEYGTDDDGELY--------ENYQAEDE 290
           DG +NG  G   AG+KPR RRLLD+QFDLLE QEYGTDD+ +          ENYQAEDE
Sbjct: 241 DGGSNGATGVYSAGEKPRPRRLLDEQFDLLERQEYGTDDNSDYGDDYYGDYEENYQAEDE 300

Query: 291 FLAEKLKGSLNNHAMDSLEPDDD-KYRVPADLLKKNETPNSEEQEDFAADLIRRIXXXXX 349
            LAEKLK SL    ++ LE +   +Y+VPA+          EE++D AAD+IRR      
Sbjct: 301 SLAEKLKLSLGTRKVEDLEHEQKGQYKVPAE---------GEEEKDSAADVIRRCKEYGE 351

Query: 350 XXXXXXXXXXXXXXXXXXXXXXXXXXXTIVSTYSNLDNHPGKIEAPGVARKKKLAETMSA 409
                                      TIVSTY+NLDNHPGKIE P   RKKKL ET++A
Sbjct: 352 KYEVEVEDKDAVIFEESSDESEVWDCETIVSTYTNLDNHPGKIETPWATRKKKLTETVTA 411

Query: 410 ALNSSSQIISLRGKEKLPVDFLPGGRKPSTEKVKGLSNANTEQYTRKQHGLESXXXXXXX 469
           A +S+S IISL GK KLPVD LPGGRKP+ +KVK  +   TEQY RKQHGLES       
Sbjct: 412 AFSSASPIISLSGKAKLPVD-LPGGRKPAADKVKDATTEKTEQYKRKQHGLESKEEKKER 470

Query: 470 XXXXXXXXXXXXXXXXXXXXLYKGEAHRAQRAAAVSGPSSIHLM 513
                               LYK EA RAQR AA SG SS HLM
Sbjct: 471 KAAVKEERREARRTKKEMKELYKCEASRAQRVAAGSGASSYHLM 514