Miyakogusa Predicted Gene

Lj1g3v3556890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3556890.1 Non Characterized Hit- tr|I1LWI6|I1LWI6_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,69.41,0.0000000000005,PH domain-like,NULL; HMG-box,High mobility
group, superfamily; high mobility group,High mobility gro,CUFF.30926.1
         (494 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g082570.1 | FACT complex subunit SSRP1 | HC | chr5:3550256...   516   e-146
Medtr1g022345.2 | FACT complex subunit SSRP1 | HC | chr1:7068528...   474   e-134
Medtr1g022345.1 | FACT complex subunit SSRP1 | HC | chr1:7068528...   474   e-134
Medtr3g108380.1 | high mobility group (HMG)-box protein | LC | c...    51   2e-06

>Medtr5g082570.1 | FACT complex subunit SSRP1 | HC |
           chr5:35502565-35497078 | 20130731
          Length = 648

 Score =  516 bits (1330), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 291/487 (59%), Positives = 331/487 (67%), Gaps = 34/487 (6%)

Query: 19  KDSFREKSFHMPNSNTQYVSDEIMPMADVGDEIMPMADVGDVIMPMADVGDEIMPMADVD 78
           KDS  E SFH+PNSNTQ+V DE  P A V                     D+I+ +ADV 
Sbjct: 162 KDSLMEISFHIPNSNTQFVGDENCPPAQV-------------------FRDKIISVADVG 202

Query: 79  AGGEDAVVTFEGIGIFTPRGRYSVELHLSFFRLRGPANDFKIQYSSIVRLYLLPKLNQPR 138
           AGGEDAVVTF+GI I TPRGRYSVELHLSF RL+G ANDFKIQYSS+VRL+LLPK NQP 
Sbjct: 203 AGGEDAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPH 262

Query: 139 TFVVISLDPPIREGQTLYPHIVMQFESDFVVQCELAINEDLYNTKYNDKLELSYKGLIHG 198
           TFVVISLDPPIR+GQTLYPHIVMQFE+D+VV+ ELA++EDLYN+K+ D+LELSYKGLIH 
Sbjct: 263 TFVVISLDPPIRKGQTLYPHIVMQFETDYVVESELALSEDLYNSKFKDRLELSYKGLIHE 322

Query: 199 VFTTILCGLSGSKVTKPGTFRSFVHGYAVKSSLKAEEGYLYPLEKSFFFLPKPPTLILHE 258
           VFTT+L GLSG+KVTKPG FRS   GYAVKSSLKAE+G LYPLEKSFFFLPKPPTLI HE
Sbjct: 323 VFTTVLRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLITHE 382

Query: 259 EIDYLGFEQHIARGSKICYFHLLIRLKSEQEHLFCNIQRNEFNKLTAFIISKGLKLMDLR 318
           EIDY+ FE+H A GS + YF LLIRLKS+QEHLF NIQRNE++ L  FI SKGLK+M+L 
Sbjct: 383 EIDYVEFERHAAGGSNMHYFDLLIRLKSDQEHLFRNIQRNEYHNLYGFISSKGLKIMNL- 441

Query: 319 SAHAQPAVALARIL--GNDDAVDPHLERIKNEAXXXXXXXXXXXXXXXXXXXXSPTDDCG 376
              AQP   +A++L   +DDAVDPHLERI+NEA                    SPTDD G
Sbjct: 442 -GDAQPTTGVAKVLEGDDDDAVDPHLERIRNEAGEDESDEEDEDFVAEKDDEGSPTDDSG 500

Query: 377 GENSDANDGGDXXXXXXXXXXXXDLSXXXXXXXXXXXXXXXXXXXXXXXXXXX------- 429
            ++SDA+  GD            DLS                                  
Sbjct: 501 ADDSDASQSGDEKEIPAKKEPKKDLSSKASASTSTSTSKKKSKDADEDGKKKKQKKKKDP 560

Query: 430 XXXXRAMSGFMVFSQMETE---KTNSGMSFTDVGKVLGEKWKKMSAEDKEPYEAKAARDD 486
               R MSGFM FSQME E   K N G+SFTDV K+LGE WKKMSAE+KEPYEAK AR D
Sbjct: 561 NAPKRGMSGFMFFSQMERENIKKANPGISFTDVAKLLGENWKKMSAEEKEPYEAK-ARVD 619

Query: 487 KKFYMDE 493
           KK Y DE
Sbjct: 620 KKRYEDE 626


>Medtr1g022345.2 | FACT complex subunit SSRP1 | HC |
           chr1:7068528-7074782 | 20130731
          Length = 643

 Score =  474 bits (1220), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/333 (72%), Positives = 267/333 (80%), Gaps = 23/333 (6%)

Query: 19  KDSFREKSFHMPNSNTQYVSDEIMPMADVGDEIMPMADVGDVIMPMADVGDEIMPMADVD 78
           KDS  E SFH+P+SNTQ+V DE  P A V                     DEIM MADV 
Sbjct: 162 KDSLMEMSFHVPSSNTQFVGDEDRPPAQV-------------------FRDEIMSMADVG 202

Query: 79  AGGEDAVVTFEGIGIFTPRGRYSVELHLSFFRLRGPANDFKIQYSSIVRLYLLPKLNQPR 138
           AGGEDAVVTFEGI I TPRGRYSVELHLSF RL+G ANDFKIQYSS+VRL+LLPK NQP 
Sbjct: 203 AGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPH 262

Query: 139 TFVVISLDPPIREGQTLYPHIVMQFESDFVVQCELAINEDLYNTKYNDKLELSYKGLIHG 198
           TFV+ISLDPPIR+GQTLYPHIVMQFE+D+VV+ ELA++EDLYN+KY DKLELSYKGLIH 
Sbjct: 263 TFVIISLDPPIRKGQTLYPHIVMQFETDYVVESELAMSEDLYNSKYKDKLELSYKGLIHE 322

Query: 199 VFTTILCGLSGSKVTKPGTFRSFVHGYAVKSSLKAEEGYLYPLEKSFFFLPKPPTLILHE 258
           VFTTIL GLSG KVTKPG FRS   GYAVKSSLKAE+G LYPLEKSFFFLPKPPTLILHE
Sbjct: 323 VFTTILRGLSGGKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHE 382

Query: 259 EIDYLGFEQHIARGSKICYFHLLIRLKSEQEHLFCNIQRNEFNKLTAFIISKGLKLMDLR 318
           EIDY+ FE+H A GS + YF LLIRLKSEQEHLF NIQRNE++ L  FI SKGLK+M+L 
Sbjct: 383 EIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNL- 441

Query: 319 SAHAQPAVALARILGN--DDAVDPHLERIKNEA 349
            A AQP V +A++L N  DDAVDPHLERI+NEA
Sbjct: 442 -ADAQPTVGVAKVLENDDDDAVDPHLERIRNEA 473



 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 53/63 (84%), Gaps = 4/63 (6%)

Query: 434 RAMSGFMVFSQMETE---KTNSGMSFTDVGKVLGEKWKKMSAEDKEPYEAKAARDDKKFY 490
           RA+SGFM FSQME E   KTN G+SFTDVG+VLGEKWK +SAE+KEPYEAK A++DKK Y
Sbjct: 560 RALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAK-AQEDKKRY 618

Query: 491 MDE 493
            DE
Sbjct: 619 KDE 621


>Medtr1g022345.1 | FACT complex subunit SSRP1 | HC |
           chr1:7068528-7074782 | 20130731
          Length = 643

 Score =  474 bits (1220), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/333 (72%), Positives = 267/333 (80%), Gaps = 23/333 (6%)

Query: 19  KDSFREKSFHMPNSNTQYVSDEIMPMADVGDEIMPMADVGDVIMPMADVGDEIMPMADVD 78
           KDS  E SFH+P+SNTQ+V DE  P A V                     DEIM MADV 
Sbjct: 162 KDSLMEMSFHVPSSNTQFVGDEDRPPAQV-------------------FRDEIMSMADVG 202

Query: 79  AGGEDAVVTFEGIGIFTPRGRYSVELHLSFFRLRGPANDFKIQYSSIVRLYLLPKLNQPR 138
           AGGEDAVVTFEGI I TPRGRYSVELHLSF RL+G ANDFKIQYSS+VRL+LLPK NQP 
Sbjct: 203 AGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPH 262

Query: 139 TFVVISLDPPIREGQTLYPHIVMQFESDFVVQCELAINEDLYNTKYNDKLELSYKGLIHG 198
           TFV+ISLDPPIR+GQTLYPHIVMQFE+D+VV+ ELA++EDLYN+KY DKLELSYKGLIH 
Sbjct: 263 TFVIISLDPPIRKGQTLYPHIVMQFETDYVVESELAMSEDLYNSKYKDKLELSYKGLIHE 322

Query: 199 VFTTILCGLSGSKVTKPGTFRSFVHGYAVKSSLKAEEGYLYPLEKSFFFLPKPPTLILHE 258
           VFTTIL GLSG KVTKPG FRS   GYAVKSSLKAE+G LYPLEKSFFFLPKPPTLILHE
Sbjct: 323 VFTTILRGLSGGKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHE 382

Query: 259 EIDYLGFEQHIARGSKICYFHLLIRLKSEQEHLFCNIQRNEFNKLTAFIISKGLKLMDLR 318
           EIDY+ FE+H A GS + YF LLIRLKSEQEHLF NIQRNE++ L  FI SKGLK+M+L 
Sbjct: 383 EIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNL- 441

Query: 319 SAHAQPAVALARILGN--DDAVDPHLERIKNEA 349
            A AQP V +A++L N  DDAVDPHLERI+NEA
Sbjct: 442 -ADAQPTVGVAKVLENDDDDAVDPHLERIRNEA 473



 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 53/63 (84%), Gaps = 4/63 (6%)

Query: 434 RAMSGFMVFSQMETE---KTNSGMSFTDVGKVLGEKWKKMSAEDKEPYEAKAARDDKKFY 490
           RA+SGFM FSQME E   KTN G+SFTDVG+VLGEKWK +SAE+KEPYEAK A++DKK Y
Sbjct: 560 RALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAK-AQEDKKRY 618

Query: 491 MDE 493
            DE
Sbjct: 619 KDE 621


>Medtr3g108380.1 | high mobility group (HMG)-box protein | LC |
           chr3:50094475-50094875 | 20130731
          Length = 95

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 31/39 (79%), Gaps = 3/39 (7%)

Query: 436 MSGFMVFSQMETE---KTNSGMSFTDVGKVLGEKWKKMS 471
           +SGF +FS+ E E   KTN G+SFTDV +V+GEKWKKMS
Sbjct: 53  LSGFKLFSRKERENLKKTNIGISFTDVVRVIGEKWKKMS 91