Miyakogusa Predicted Gene

Lj1g3v3458540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3458540.1 Non Characterized Hit- tr|G7KUG0|G7KUG0_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,60.26,4e-18,
,CUFF.30762.1
         (109 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g092570.1 | UV-B-insensitive protein, putative | HC | chr7...    96   8e-21
Medtr7g007430.1 | MATE family efflux protein | HC | chr7:1481132...    54   2e-08

>Medtr7g092570.1 | UV-B-insensitive protein, putative | HC |
           chr7:36715530-36717674 | 20130731
          Length = 238

 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 64/78 (82%), Gaps = 3/78 (3%)

Query: 35  VKIRTPAGSKVPKIVLNFAD---EEEGELELLTPQKKLLDSIDMVEKLVRESLQKLKQSP 91
           +K++TP GSKVPKI+++ A     E+GE ELLTPQKKLL SID++E+ V++ L KLK++P
Sbjct: 161 IKLKTPYGSKVPKIIIDIAKLPAAEDGESELLTPQKKLLHSIDIIEREVKQELMKLKRTP 220

Query: 92  SGRKAEREKRVRTLMSMR 109
           + +KAE +KRVRTLMSMR
Sbjct: 221 TAKKAEHQKRVRTLMSMR 238


>Medtr7g007430.1 | MATE family efflux protein | HC |
           chr7:1481132-1482468 | 20130731
          Length = 185

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 40/52 (76%), Gaps = 4/52 (7%)

Query: 35  VKIRTPAGSKVPKIVLNFA---DEEEGELELLTPQKK-LLDSIDMVEKLVRE 82
           +K+ TP GSKVPKI+++ A     E+GE ELLTPQKK LL SID++E+ V++
Sbjct: 134 IKLSTPYGSKVPKIIIDIAKLPAAEDGESELLTPQKKQLLHSIDIIEREVKQ 185