Miyakogusa Predicted Gene

Lj1g3v3446330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3446330.1 Non Characterized Hit- tr|I1BP95|I1BP95_RHIO9
Uncharacterized protein OS=Rhizopus delemar (strain
RA,25.14,0.00000000000006,SUBFAMILY NOT NAMED,NULL; NUCLEOPORIN
P54,Nucleoporin Nup54; seg,NULL; Nup54,Nucleoporin Nup54,
alph,CUFF.30820.1
         (360 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g085590.1 | nucleoporin complex subunit 54 | HC | chr3:386...   525   e-149

>Medtr3g085590.1 | nucleoporin complex subunit 54 | HC |
           chr3:38683674-38688680 | 20130731
          Length = 380

 Score =  525 bits (1352), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/382 (72%), Positives = 296/382 (77%), Gaps = 26/382 (6%)

Query: 1   MFGAQPSSSPSPSLFGTPSAS--TPAFGTPSSTPAF-----GTPSSTPAFG--------- 44
           MFG Q SSS    LFGTPS++  TP FGTPSSTPAF     GTPSSTPAFG         
Sbjct: 1   MFGGQSSSS----LFGTPSSAFGTPTFGTPSSTPAFSTPGFGTPSSTPAFGASSTPAFGG 56

Query: 45  -SSLFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXLTTQMAN 98
            SSLFS                                               LTTQMAN
Sbjct: 57  GSSLFSTPFSAQQQPQQQQQQQQNSLFQLSPSTGFGFQNSTPAPQPSPFPNSQLTTQMAN 116

Query: 99  VAPVPYSLPDRDVQAIVDAYKEDPGNPKFAFKHLLFSVTEPQFRMKPAGISDIMWAEAMG 158
           VAPVP+SL DRD+QAI+D+YKED GNPK+AFKHLLFSVT+PQFR+KPAG+SDIMWAEAMG
Sbjct: 117 VAPVPFSLADRDIQAILDSYKEDAGNPKYAFKHLLFSVTDPQFRVKPAGVSDIMWAEAMG 176

Query: 159 KLEGMESADRERLWPQVVQGFKDLSQRLKIQDEVIASDAERLRVTQSNVKMLQRHFQADT 218
           KLEGMESADRERLWPQ VQGFKDLSQRLK+QDEVI SDAERL VTQSNVKMLQRHFQADT
Sbjct: 177 KLEGMESADRERLWPQQVQGFKDLSQRLKLQDEVIVSDAERLSVTQSNVKMLQRHFQADT 236

Query: 219 LPWIQRLKQKEQILQQRLLRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGA 278
           LPWIQRLKQKEQILQQR+LRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGA
Sbjct: 237 LPWIQRLKQKEQILQQRILRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGA 296

Query: 279 ELTRRVQNLLTVSRVQAKSNGFGGPVYLPGSTKIHEQSLTDLQEVLQQQMEAIARLGSVL 338
           EL+RRVQNLL VSRV+A SNGF    +L GSTKIH+QSL DLQEVLQQQM+AIARLGSVL
Sbjct: 297 ELSRRVQNLLGVSRVKANSNGFCNSAHLLGSTKIHDQSLADLQEVLQQQMDAIARLGSVL 356

Query: 339 KRDVRDMEIMIAEDTGATENGN 360
           KRD RDMEIM+AEDTG +ENG+
Sbjct: 357 KRDARDMEIMMAEDTGTSENGH 378