Miyakogusa Predicted Gene

Lj1g3v3444150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3444150.1 tr|A9RJ26|A9RJ26_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=Pb PE=4
SV=1,57.32,7e-19,Chlorophyll a-b binding protein,Chlorophyll a/b
binding protein domain,CUFF.30751.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g062970.1 | one helix protein OHP | HC | chr7:22904433-229...   145   1e-35
Medtr7g062970.2 | one helix protein OHP | HC | chr7:22904433-229...   110   2e-25

>Medtr7g062970.1 | one helix protein OHP | HC |
           chr7:22904433-22902816 | 20130731
          Length = 120

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/115 (67%), Positives = 90/115 (78%), Gaps = 11/115 (9%)

Query: 4   SSIILRSSLSFYSTNQQVY------LNRSATHKNKNRVSFFRVQAAAKPPAGVEFPKVQP 57
           SS IL +  S +STN QV       LNRS+    K RVSF     A KPP+GVEFPKVQP
Sbjct: 11  SSFILGTP-SLHSTNHQVLFLQNHNLNRSS--PQKKRVSF--TVNAVKPPSGVEFPKVQP 65

Query: 58  QFKAPFLGFTKTAEVWNSRACMIGLIGTFIVELIINKGILQVIGVEIGKGLNLPL 112
           QFK PFLGFTKTAE+WNSRACM+GLIGTFIVELII+KGIL+VIG+E+GKGL++PL
Sbjct: 66  QFKPPFLGFTKTAEIWNSRACMMGLIGTFIVELIIHKGILEVIGLEVGKGLDIPL 120


>Medtr7g062970.2 | one helix protein OHP | HC |
          chr7:22904433-22903683 | 20130731
          Length = 106

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/94 (65%), Positives = 69/94 (73%), Gaps = 11/94 (11%)

Query: 4  SSIILRSSLSFYSTNQQVY------LNRSATHKNKNRVSFFRVQAAAKPPAGVEFPKVQP 57
          SS IL +  S +STN QV       LNRS+    K RVSF     A KPP+GVEFPKVQP
Sbjct: 11 SSFILGTP-SLHSTNHQVLFLQNHNLNRSS--PQKKRVSF--TVNAVKPPSGVEFPKVQP 65

Query: 58 QFKAPFLGFTKTAEVWNSRACMIGLIGTFIVELI 91
          QFK PFLGFTKTAE+WNSRACM+GLIGTFIVEL+
Sbjct: 66 QFKPPFLGFTKTAEIWNSRACMMGLIGTFIVELV 99