Miyakogusa Predicted Gene

Lj1g3v3443760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3443760.1 Non Characterized Hit- tr|D8TIS6|D8TIS6_VOLCA
Putative uncharacterized protein (Fragment) OS=Volvox
,35.37,0.00000000000001,seg,NULL; PRA1,Prenylated rab acceptor PRA1;
PRA1 PROTEIN,NULL,CUFF.30721.1
         (209 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g064090.1 | PRA1 (prenylated RAB acceptor) family protein ...   373   e-104

>Medtr7g064090.1 | PRA1 (prenylated RAB acceptor) family protein |
           HC | chr7:23424401-23417361 | 20130731
          Length = 209

 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/209 (88%), Positives = 189/209 (90%)

Query: 1   MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFALPRSSSKWNSRLKCNLYYYRTNYFI 60
           MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRF +PRSS+KWNSRLKCNLYYYRTNYFI
Sbjct: 1   MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSNKWNSRLKCNLYYYRTNYFI 60

Query: 61  LIVSVLILGFLRRPXXXXXXXXXXXXXXXXNDSFAGTFSEKVTRTVRQFSPHLAAKMRPP 120
           LIVSVLILGFLRRP                NDSFAGTFSEKVTRTVRQFSPHLAAKMRPP
Sbjct: 61  LIVSVLILGFLRRPLAIVAALLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHLAAKMRPP 120

Query: 121 LTPVIRGRPAAKRAIYICGRPRWVFVLIFSSASFILWFVSAGLLTVLWALAIGLLATILH 180
           LTPVIRGRP+AKRAIYICGRPRWVFV IFSSASF LWFVSAGLLTVLWALAIGLLATILH
Sbjct: 121 LTPVIRGRPSAKRAIYICGRPRWVFVSIFSSASFFLWFVSAGLLTVLWALAIGLLATILH 180

Query: 181 ASFRTPNLKARLNTFREEFRAVWRNYSEL 209
           AS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct: 181 ASLRTPNLKARLNTFREEFRAVWRNYSEL 209