Miyakogusa Predicted Gene
- Lj1g3v3404350.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3404350.1 Non Characterized Hit- tr|I1K789|I1K789_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,89.51,0,RNA
recognition motif,RNA recognition motif domain; seg,NULL; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT N,CUFF.30635.1
(283 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 383 e-107
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 382 e-106
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 163 1e-40
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 160 1e-39
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 160 2e-39
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 157 8e-39
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 157 8e-39
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 142 3e-34
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 142 3e-34
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 141 6e-34
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 141 7e-34
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 137 1e-32
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 137 1e-32
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 1e-16
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 1e-16
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 1e-16
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 84 2e-16
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 83 3e-16
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 83 3e-16
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 4e-16
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 82 6e-16
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 82 6e-16
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 82 6e-16
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 82 6e-16
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 82 8e-16
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 8e-15
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 8e-15
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 8e-15
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 3e-14
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 3e-14
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 6e-14
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 7e-14
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 8e-14
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 3e-13
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 6e-12
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 6e-12
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 1e-11
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 1e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 1e-11
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 4e-11
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 4e-11
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 4e-10
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 4e-10
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 5e-10
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 9e-10
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 58 1e-08
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 1e-08
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 58 1e-08
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 58 1e-08
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 1e-08
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 1e-08
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 1e-08
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 1e-08
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 56 5e-08
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 55 6e-08
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 55 7e-08
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 7e-08
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 54 2e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 54 2e-07
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 53 3e-07
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 53 3e-07
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 53 3e-07
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 53 3e-07
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 53 4e-07
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 52 5e-07
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 52 6e-07
Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 8e-07
Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 8e-07
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 52 9e-07
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 51 1e-06
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 1e-06
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 1e-06
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 51 1e-06
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 50 2e-06
Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 50 2e-06
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 50 2e-06
Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 50 2e-06
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 50 2e-06
Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC | chr7... 50 3e-06
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 49 4e-06
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 49 4e-06
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/267 (76%), Positives = 218/267 (81%), Gaps = 5/267 (1%)
Query: 17 FQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76
FQ++NSPFGDTT+TKVFVGGLAWETQSETMRRYFEQFG+ILEAVVITDKNTGRSKGYGFV
Sbjct: 16 FQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFV 75
Query: 77 TFRDPEAARRACADPAPVIDGRRANCNLASXXX-XXXXXXXXXXXXASHYVGSLQPARGS 135
TFRDPEAARRACADP+PVIDGRRANCNLAS AS YVGSLQPARG+
Sbjct: 76 TFRDPEAARRACADPSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGA 135
Query: 136 YVGGFGYQQQPLSYGYQQGLVXXXXXXXXXXXXXXXXQNVYNPYVG-QQYLQIYGVPGAV 194
YVGG+GY QQPLSYGYQQG+V Q +YNPY G QQYLQIYGVPGA+
Sbjct: 136 YVGGYGY-QQPLSYGYQQGMVYPPYGYTTYGPEYVYPQGMYNPYAGQQQYLQIYGVPGAM 194
Query: 195 NTTVYPYGQLGQTIPSGHGYTAMPGYTVPAHQIVPYGGSSVNSITTSPMPAIQASYPSGI 254
NTT+YPYGQLGQ IP GHGYTAM GYTVP HQIVPYGGS+VN+ITTSP+PAIQ YPSGI
Sbjct: 195 NTTIYPYGQLGQAIPGGHGYTAMQGYTVPGHQIVPYGGSNVNAITTSPVPAIQVPYPSGI 254
Query: 255 ASPVPGQPQFIVPAPSQFMQGGGHDQT 281
A+PVPGQPQFIV QFMQG G DQT
Sbjct: 255 AAPVPGQPQFIV--SPQFMQGSGPDQT 279
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/269 (75%), Positives = 219/269 (81%), Gaps = 5/269 (1%)
Query: 17 FQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76
FQ++NSPFGDTT+TKVFVGGLAWETQSETMRRYFEQFG+ILEAVVITDKNTGRSKGYGFV
Sbjct: 16 FQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFV 75
Query: 77 TFRDPEAARRACADPAPVIDGRRANCNLASXXX-XXXXXXXXXXXXASHYVGSLQPARGS 135
TFRDPEAARRACADP+PVIDGRRANCNLAS AS YVGSLQPARG+
Sbjct: 76 TFRDPEAARRACADPSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGA 135
Query: 136 YVGGFGYQQQPLSYGYQQGLVXXXXXXXXXXXXXXXXQNVYNPYVG-QQYLQIYGVPGAV 194
YVGG+GY QQPLSYGYQQG+V Q +YNPY G QQYLQIYGVPGA+
Sbjct: 136 YVGGYGY-QQPLSYGYQQGMVYPPYGYTTYGPEYVYPQGMYNPYAGQQQYLQIYGVPGAM 194
Query: 195 NTTVYPYGQLGQTIPSGHGYTAMPGYTVPAHQIVPYGGSSVNSITTSPMPAIQASYPSGI 254
NTT+YPYGQLGQ IP GHGYTAM GYTVP HQIVPYGGS+VN+ITTSP+PAIQ YPSGI
Sbjct: 195 NTTIYPYGQLGQAIPGGHGYTAMQGYTVPGHQIVPYGGSNVNAITTSPVPAIQVPYPSGI 254
Query: 255 ASPVPGQPQFIVPAPSQFMQGGGHDQTAG 283
A+PVPGQPQFIV QFMQG G DQT G
Sbjct: 255 AAPVPGQPQFIV--SPQFMQGSGPDQTDG 281
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 80/85 (94%)
Query: 22 SPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDP 81
S FGDTTFTKVFVGGLAWET ++ MR YFEQFG+ILEAV+ITDKNTG+SKGYGFVTFRDP
Sbjct: 8 SQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDP 67
Query: 82 EAARRACADPAPVIDGRRANCNLAS 106
E+ARRACADP PVIDGRRANCN+AS
Sbjct: 68 ESARRACADPNPVIDGRRANCNIAS 92
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/83 (86%), Positives = 78/83 (93%)
Query: 24 FGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEA 83
FGDTT+TKVFVGGLAWETQ ETM++YFEQFGEILEAVVITDK TGRSKGYGFVTFR+P+A
Sbjct: 10 FGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDA 69
Query: 84 ARRACADPAPVIDGRRANCNLAS 106
A RAC D AP+IDGRRANCNLAS
Sbjct: 70 AMRACVDAAPIIDGRRANCNLAS 92
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/83 (86%), Positives = 78/83 (93%)
Query: 24 FGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEA 83
FGDTT+TKVFVGGLAWETQ ETM++YFEQFGEILEAVVITDK TGRSKGYGFVTFR+P+A
Sbjct: 10 FGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDA 69
Query: 84 ARRACADPAPVIDGRRANCNLAS 106
A RAC D AP+IDGRRANCNLAS
Sbjct: 70 AMRACVDAAPIIDGRRANCNLAS 92
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 157 bits (398), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 71/83 (85%), Positives = 77/83 (92%)
Query: 24 FGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEA 83
+ DTTFTK+FVGGLAWETQ ETMR YFEQFGEILEAVVITDK TGRSKGYGFVTF+DPEA
Sbjct: 19 YNDTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEA 78
Query: 84 ARRACADPAPVIDGRRANCNLAS 106
A RAC +P+PVIDGRRANCN+AS
Sbjct: 79 AIRACQNPSPVIDGRRANCNIAS 101
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 157 bits (398), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 71/83 (85%), Positives = 77/83 (92%)
Query: 24 FGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEA 83
+ DTTFTK+FVGGLAWETQ ETMR YFEQFGEILEAVVITDK TGRSKGYGFVTF+DPEA
Sbjct: 19 YNDTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEA 78
Query: 84 ARRACADPAPVIDGRRANCNLAS 106
A RAC +P+PVIDGRRANCN+AS
Sbjct: 79 AIRACQNPSPVIDGRRANCNIAS 101
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 76/89 (85%)
Query: 17 FQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76
+V GDTT+TK+FVGGLAWET+ +T++RYF+QFG+ILEAVVITD+ TG+SKGYGFV
Sbjct: 13 LNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFV 72
Query: 77 TFRDPEAARRACADPAPVIDGRRANCNLA 105
TF+DP +A AC +P P+IDGRRANCNLA
Sbjct: 73 TFKDPNSAILACQNPNPMIDGRRANCNLA 101
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 76/89 (85%)
Query: 17 FQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76
+V GDTT+TK+FVGGLAWET+ +T++RYF+QFG+ILEAVVITD+ TG+SKGYGFV
Sbjct: 13 LNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFV 72
Query: 77 TFRDPEAARRACADPAPVIDGRRANCNLA 105
TF+DP +A AC +P P+IDGRRANCNLA
Sbjct: 73 TFKDPNSAILACQNPNPMIDGRRANCNLA 101
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 76/89 (85%)
Query: 17 FQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76
+V GDTT+TK+FVGGLAWET+ +T++RYF+QFG+ILEAVVITD+ TG+SKGYGFV
Sbjct: 13 LNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFV 72
Query: 77 TFRDPEAARRACADPAPVIDGRRANCNLA 105
TF+DP +A AC +P P+IDGRRANCNLA
Sbjct: 73 TFKDPNSAILACQNPNPMIDGRRANCNLA 101
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 141 bits (356), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 76/89 (85%)
Query: 17 FQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76
+V GDTT+TK+FVGGLAWET+ +T++RYF+QFG+ILEAVVITD+ TG+SKGYGFV
Sbjct: 13 LNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFV 72
Query: 77 TFRDPEAARRACADPAPVIDGRRANCNLA 105
TF+DP +A AC +P P+IDGRRANCNLA
Sbjct: 73 TFKDPNSAILACQNPNPMIDGRRANCNLA 101
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 75/85 (88%)
Query: 22 SPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDP 81
S FGDTT TKVFVGGLAWET +T+R +FE++G+ILEAV+I+DK TGRSKGYGFVTF+D
Sbjct: 10 SQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDA 69
Query: 82 EAARRACADPAPVIDGRRANCNLAS 106
++A++AC +P +I+GRRANCN+AS
Sbjct: 70 DSAKKACEEPTVIINGRRANCNIAS 94
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 75/85 (88%)
Query: 22 SPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDP 81
S FGDTT TKVFVGGLAWET +T+R +FE++G+ILEAV+I+DK TGRSKGYGFVTF+D
Sbjct: 10 SQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDA 69
Query: 82 EAARRACADPAPVIDGRRANCNLAS 106
++A++AC +P +I+GRRANCN+AS
Sbjct: 70 DSAKKACEEPTVIINGRRANCNIAS 94
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GG++W+T + +R+YF+ FG+++EAV++ D+ TGR++G+GFV F DP A R +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 91 PAPVIDGRRANCNLA 105
VIDGR A
Sbjct: 65 K-HVIDGRTVEAKKA 78
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGLA + YF+QFG I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 91 PAPVIDGRRANCNLA 105
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GG++W+T + +R+YF+ FG+++EAV++ D+ TGR++G+GFV F DP A R +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 91 PAPVIDGRRANCNLA 105
VIDGR A
Sbjct: 65 K-HVIDGRTVEAKKA 78
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGLA + YF+QFG I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 91 PAPVIDGRRANCNLA 105
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GG++W+T + +R+YF+ FG+++EAV++ D+ TGR++G+GFV F DP A R +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 91 PAPVIDGRRANCNLA 105
VIDGR A
Sbjct: 65 K-HVIDGRTVEAKKA 78
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGLA + YF+QFG I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 91 PAPVIDGRRANCNLA 105
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
DTT K+FV GL+ ET +ET+R F +G++ EA+VI DK TGRSKGYGFV +R + A
Sbjct: 72 DTTRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAV 131
Query: 86 RACADPAPVIDGRRANCNLAS 106
A +P+ IDGR LA+
Sbjct: 132 LALKEPSKKIDGRMTVTQLAA 152
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
GD + KVFVG + +E +E++ F ++GEI E + DK +G+++G+ F ++ E A
Sbjct: 158 GDVSSRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGA 217
Query: 85 RRACADPAPVIDGRRANCNLA 105
+ + A+ +DG + C A
Sbjct: 218 KNSVAESMKTVDGHQVICKFA 238
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
++ K+F+GG++W+T E ++ YF +GE++EAV++ D+ TGR++G+GFV F DP A
Sbjct: 2 ESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 86 RACADPAPVIDGRRANCNLA 105
R D +IDGR A
Sbjct: 62 RVIIDKH-IIDGRTVEAKKA 80
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+T+ EA R
Sbjct: 107 KIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYK 166
Query: 91 PAPVIDGRRANCNLA 105
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
++ K+F+GG++W+T E ++ YF +GE++EAV++ D+ TGR++G+GFV F DP A
Sbjct: 2 ESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 86 RACADPAPVIDGRRANCNLA 105
R D +IDGR A
Sbjct: 62 RVIIDKH-IIDGRTVEAKKA 80
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+T+ EA R
Sbjct: 107 KIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYK 166
Query: 91 PAPVIDGRRANCNLA 105
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D + K+F+ GL W+T +E +R F +GE+ EA+VI DK TG+SKGYGFVTF + A
Sbjct: 69 DISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGAL 128
Query: 86 RACADPAPVIDGRRANCNLAS 106
A +P+ IDGR LA+
Sbjct: 129 LALREPSKRIDGRVTVTQLAA 149
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 21 NSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRD 80
N+ D K++V + + + + +F +GEI E + DK TGRSKG+ ++
Sbjct: 156 NTNAADVAQRKIYVSNVPPDLPGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKT 215
Query: 81 PEAARRACADPAPVIDGRRANCNLA 105
PE A A ++P ++GR+ NC LA
Sbjct: 216 PEGANAAVSEPVKNVEGRQLNCKLA 240
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 49/82 (59%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
GD + K+FV GL W+T S T+ F Q+GEI + +TDK +G+SKGYGF+ F+ A
Sbjct: 122 GDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGA 181
Query: 85 RRACADPAPVIDGRRANCNLAS 106
R A +P I R C LAS
Sbjct: 182 RNALKEPQKKIGNRMTACQLAS 203
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 28 TFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
T K+++ + E ++ + +F +FGEI E + DK TG+ KG+ ++ E+ARRA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 88 CADPAPVIDGRRANCNLA 105
+P +G +C A
Sbjct: 288 LEEPHKEFEGHILHCQKA 305
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 49/82 (59%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
GD + K+FV GL W+T S T+ F Q+GEI + +TDK +G+SKGYGF+ F+ A
Sbjct: 122 GDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGA 181
Query: 85 RRACADPAPVIDGRRANCNLAS 106
R A +P I R C LAS
Sbjct: 182 RNALKEPQKKIGNRMTACQLAS 203
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 28 TFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
T K+++ + E ++ + +F +FGEI E + DK TG+ KG+ ++ E+ARRA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 88 CADPAPVIDGRRANCNLA 105
+P +G +C A
Sbjct: 288 LEEPHKEFEGHILHCQKA 305
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 49/82 (59%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
GD + K+FV GL W+T S T+ F Q+GEI + +TDK +G+SKGYGF+ F+ A
Sbjct: 122 GDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGA 181
Query: 85 RRACADPAPVIDGRRANCNLAS 106
R A +P I R C LAS
Sbjct: 182 RNALKEPQKKIGNRMTACQLAS 203
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 28 TFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
T K+++ + E ++ + +F +FGEI E + DK TG+ KG+ ++ E+ARRA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 88 CADPAPVIDGRRANCNLA 105
+P +G +C A
Sbjct: 288 LEEPHKEFEGHILHCQKA 305
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 49/82 (59%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
GD + K+FV GL W+T S T+ F Q+GEI + +TDK +G+SKGYGF+ F+ A
Sbjct: 122 GDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGA 181
Query: 85 RRACADPAPVIDGRRANCNLAS 106
R A +P I R C LAS
Sbjct: 182 RNALKEPQKKIGNRMTACQLAS 203
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 28 TFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
T K+++ + E ++ + +F +FGEI E + DK TG+ KG+ ++ E+ARRA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 88 CADPAPVIDGRRANCNLA 105
+P +G +C A
Sbjct: 288 LEEPHKEFEGHILHCQKA 305
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 49/82 (59%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
GD + K+FV GL W+T S T+ F Q+GEI + +TDK +G+SKGYGF+ F+ A
Sbjct: 122 GDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGA 181
Query: 85 RRACADPAPVIDGRRANCNLAS 106
R A +P I R C LAS
Sbjct: 182 RNALKEPQKKIGNRMTACQLAS 203
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 28 TFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
T K+++ + E ++ + +F +FGEI E + DK TG+ KG+ ++ E+ARRA
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 88 CADPAPVIDGRRANCNLA 105
+P +G +C A
Sbjct: 288 LEEPHKEFEGHILHCQKA 305
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FV GL W+ +ET+ F ++GEI + +TDK +G+SKGY F+ F+ R
Sbjct: 161 DPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCR 220
Query: 86 RACADPAPVIDGRRANCNLAS 106
RA P VI R +C LAS
Sbjct: 221 RALKQPQKVIGNRTTSCQLAS 241
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 28 TFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
T K+FV ++ + + + +F+QFGE+ + + DK TG+ KG+ ++ E+A++A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 88 CADPAPVIDGRRANCNLA 105
+P V +G C A
Sbjct: 319 LEEPNKVFEGHTLYCQKA 336
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FV GL W+ +ET+ F ++GEI + +TDK +G+SKGY F+ F+ R
Sbjct: 161 DPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCR 220
Query: 86 RACADPAPVIDGRRANCNLAS 106
RA P VI R +C LAS
Sbjct: 221 RALKQPQKVIGNRTTSCQLAS 241
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 28 TFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
T K+FV ++ + + + +F+QFGE+ + + DK TG+ KG+ ++ E+A++A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 88 CADPAPVIDGRRANCNLA 105
+P V +G C A
Sbjct: 319 LEEPNKVFEGHTLYCQKA 336
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FV GL W+ +ET+ F ++GEI + +TDK +G+SKGY F+ F+ R
Sbjct: 161 DPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCR 220
Query: 86 RACADPAPVIDGRRANCNLAS 106
RA P VI R +C LAS
Sbjct: 221 RALKQPQKVIGNRTTSCQLAS 241
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 28 TFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
T K+FV ++ + + + +F+QFGE+ + + DK TG+ KG+ ++ E+A++A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 88 CADPAPVIDGRRANCNLA 105
+P V +G C A
Sbjct: 319 LEEPNKVFEGHTLYCQKA 336
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D+ K+F+GG++W+T E ++ +F +G++L V+ +KNTG+ +G+GFV F DP
Sbjct: 2 DSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
Query: 86 RACADPAPVIDGRRANCNLA 105
R D VIDGR + A
Sbjct: 62 RVLEDKH-VIDGRTVDAKRA 80
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
G+ K+FVGGL E R+YFE +G + + VV+ D+NTGR +G+GF+TF EA
Sbjct: 107 GNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAV 166
Query: 85 RRACADPAPVIDGRRANCNLA 105
R ++G++ A
Sbjct: 167 DRVLHKTFHDLNGKQVEVKRA 187
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D+ K+F+GG++W+T E ++ +F +G++L V+ +KNTG+ +G+GFV F DP
Sbjct: 2 DSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
Query: 86 RACADPAPVIDGRRANCNLA 105
R D VIDGR + A
Sbjct: 62 RVLEDKH-VIDGRTVDAKRA 80
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
G+ K+FVGGL E R+YFE +G + + VV+ D+NTGR +G+GF+TF EA
Sbjct: 107 GNMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAV 166
Query: 85 RRACADPAPVIDGRRANCNLA 105
R ++G++ A
Sbjct: 167 DRVLHKTFHDLNGKQVEVKRA 187
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GG++W+T E +R YF +GE+ EAV++ D+ TGR++G+GFV F DP A +
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 91 PAPVIDGRRANCNLA 105
IDGR A
Sbjct: 67 KHN-IDGRMVEAKKA 80
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGLA ++YF+QFG I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
Query: 91 PAPVIDGRRANCNLA 105
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GG++W+T E +R YF +GE+ EAV++ D+ TGR++G+GFV F DP A +
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 91 PAPVIDGRRANCNLA 105
IDGR A
Sbjct: 67 KHN-IDGRMVEAKKA 80
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGLA ++YF+QFG I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
Query: 91 PAPVIDGRRANCNLA 105
++G+ A
Sbjct: 167 TFHELNGKMVEVKRA 181
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+ FVGGLAW T SE + + F Q+GEI+++ +I D+ TGRS+G+GFVTF D ++ R A
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 91 -PAPVIDGRRANCNLA 105
+DGR N A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+ FVGGLAW T S+ + + F +FGEI ++ VI D+ TGRS+G+GFVTF + ++ R A +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 91 -PAPVIDGRRANCNLA 105
IDGR N A
Sbjct: 69 MNGQDIDGRNITVNEA 84
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC-A 89
+ FVGGLAW T +E + + F Q+GEI+++ +I D+ TGRS+G+GFVTF + ++ A A
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 90 DPAPVIDGRRANCNLA 105
+DGR N A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC-A 89
+ FVGGLAW T +E + + F Q+GEI+++ +I D+ TGRS+G+GFVTF + ++ A A
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 90 DPAPVIDGRRANCNLA 105
+DGR N A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC- 88
TK+F+GG+++ T ++R F ++GE+L+A +I D+ TGRS+G+GF+TF E A A
Sbjct: 42 TKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 101
Query: 89 ADPAPVIDGRRANCNLAS 106
A + GRR N A+
Sbjct: 102 ALDGQDLHGRRVRVNYAN 119
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 17 FQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76
FQ + F T TK+FVGG+++ T +++ F ++G++L+A +I D+ +GRSKG+GFV
Sbjct: 32 FQAIRC-FSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFV 90
Query: 77 TFRDPEAARRAC-ADPAPVIDGRRANCNLAS 106
T+ E A A A + GRR N A+
Sbjct: 91 TYNTVEEASSAIQALDGQDLYGRRVGVNFAN 121
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 17 FQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76
FQ + F T TK+FVGG+++ T +++ F ++G++L+A +I D+ +GRSKG+GFV
Sbjct: 32 FQAIRC-FSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFV 90
Query: 77 TFRDPEAARRAC-ADPAPVIDGRRANCNLAS 106
T+ E A A A + GRR N A+
Sbjct: 91 TYNTVEEASSAIQALDGQDLYGRRVGVNFAN 121
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC-A 89
K+F+GG+++ T +R F ++G++L+A +I D++TGRS+G+GF+TF E A A A
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 90 DPAPVIDGRRANCNLAS 106
+DGR N A+
Sbjct: 101 MDNKELDGRTVRVNYAT 117
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC-A 89
K+F+GG+++ T +R F ++G++L+A +I D++TGRS+G+GF+TF E A A A
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 90 DPAPVIDGRRANCNLAS 106
+DGR N A+
Sbjct: 101 MDNKELDGRTVRVNYAT 117
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+K+F+GGL++ +++R F +G+++EA VITD+ TGRS+G+GFV F E+A A +
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 90 DPAPVIDGR 98
++GR
Sbjct: 96 MDGQDLNGR 104
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+K+F+GGL++ +++R F +G+++EA VITD+ TGRS+G+GFV F E+A A +
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 90 DPAPVI 95
V+
Sbjct: 96 MDGQVV 101
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
TK+F+ GL++ T +R FEQ G+I+E VI + TG SKGYGFV F AA A
Sbjct: 33 TKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARK 92
Query: 90 D-PAPVIDGRR 99
+ ++DGRR
Sbjct: 93 ELHGQIVDGRR 103
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 17 FQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76
F+ NS + K+FVGGL+W ++++ F FG++ E ++ DK++GR++G+GFV
Sbjct: 23 FRFFNSSSSSASSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFV 82
Query: 77 TFRDPEAARRAC-ADPAPVIDGRRANCNLA 105
F + +AA+ A A + GR N A
Sbjct: 83 IFSNEDAAKSAKDAMDGKALLGRPLRINFA 112
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 9/86 (10%)
Query: 30 TKVFVGGL--------AWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDP 81
TK+F+GG+ ++ T ++R F ++GE+L+A +I D+ TGRS+G+GF+TF
Sbjct: 42 TKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSV 101
Query: 82 EAARRAC-ADPAPVIDGRRANCNLAS 106
E A A A + GRR N A+
Sbjct: 102 EEASSAIQALDGQDLHGRRVRVNYAN 127
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 40/50 (80%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRD 80
K+F+GGLA +T E +YFE++GEI ++V++ D++TGR +G+GF+T+ D
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYAD 68
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FVGG+ + ++ +F + G ++E +I D T RS+G+GFV F +A
Sbjct: 102 DFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVD 161
Query: 86 RACAD 90
AD
Sbjct: 162 NLLAD 166
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL++ T +T+ F +G+++EA VITD+ + +SKGYGFVTF + A +A +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 91 -PAPVIDGR 98
++GR
Sbjct: 93 MNEKALNGR 101
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D+ K+FVGG++ ET +T++ +F ++G++L + + D+ T +G+GFVTF D +A
Sbjct: 6 DSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAH 65
Query: 86 RACADPAPVIDGRRANCNLA 105
A D ++ GR+ A
Sbjct: 66 NALQDTHAIL-GRKVEVRKA 84
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL E +RYFE+FG I + VV+ D T R +G+GF+TF ++ +
Sbjct: 118 KIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMR 177
Query: 91 PAPVIDGRRANCNLA 105
++GR+ A
Sbjct: 178 SFHDLNGRQVEVKRA 192
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGLA + YF+QFG I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 96
Query: 91 PAPVIDGR 98
++G+
Sbjct: 97 TFHELNGK 104
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC-A 89
K++VGG+++ T +R F ++G++L+A VI D+ GRSKG+GFVTF E A A A
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 90 DPAPVIDGRRANCNLA 105
+ GR N A
Sbjct: 101 MDNQELHGRTVRVNYA 116
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FV GL++ T +T+R FE FGE++E VI DK + RSKGY F+ + EAA A +
Sbjct: 193 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKE 252
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GGLA ET ++F ++GEI ++V++ D+ TG+ +G+GF+T+ DP + D
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 105
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEA 83
D K+FVGG+ + R +F ++GE+ + ++ D +T RS+G+GFVTF EA
Sbjct: 129 DFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEA 186
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 20 VNSPFGDTT-FTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 78
NS DT+ VFVG L+ E T+ F + +A V+ D TGRSKGYGFV+F
Sbjct: 118 ANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSF 177
Query: 79 RDPEAARRACAD-PAPVIDGRRANCNLAS 106
RD + A+ A D + R+ CN A+
Sbjct: 178 RDHQDAQSAINDMTGKWLGNRQIRCNWAT 206
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
+K+FV GLA+ T E + F Q+G +++A ++ +K R KG+G+VTF + E AR+A
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKA 89
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 20 VNSPFGDTT-FTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 78
NS DT+ VFVG L+ E T+ F + +A V+ D TGRSKGYGFV+F
Sbjct: 134 ANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSF 193
Query: 79 RDPEAARRACAD-PAPVIDGRRANCNLAS 106
RD + A+ A D + R+ CN A+
Sbjct: 194 RDHQDAQSAINDMTGKWLGNRQIRCNWAT 222
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 20 VNSPFGDTT-FTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 78
NS DT+ VFVG L+ E T+ F + +A V+ D TGRSKGYGFV+F
Sbjct: 134 ANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSF 193
Query: 79 RDPEAARRACAD-PAPVIDGRRANCNLAS 106
RD + A+ A D + R+ CN A+
Sbjct: 194 RDHQDAQSAINDMTGKWLGNRQIRCNWAT 222
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
+K+FV GLA+ T E + F Q+G +++A ++ +K R KG+G+VTF + E AR+A
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKA 89
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++VF+GGL +T + +R E G+I+E +I D+ TG SKGY FV ++ E A++A
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 90 D 90
D
Sbjct: 164 D 164
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++VF+GGL +T + +R E G+I+E +I D+ TG SKGY FV ++ E A++A
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 90 D 90
D
Sbjct: 164 D 164
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++VF+GGL +T + +R E G+I+E +I D+ TG SKGY FV ++ E A++A
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 90 D 90
D
Sbjct: 164 D 164
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
T +FV GL+ T +ET+R F++FGE++ A V+TD+ +G SKG+GFV + E A
Sbjct: 51 TNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDA 105
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
K+F+ GL+ T E + F FG++LEA VITD+ +GRSKG+ FV++ E A +A
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKA 92
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+++V LAWE + + + F + G+I+ A V+ D+ TGRS+G+GFVT D A A
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIA 265
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+++V LAWE + + + F + G+I+ A V+ D+ TGRS+G+GFVT D A A
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIA 265
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
DT +T +++ L + +R F FG+I+ V D N G SKG+GFV F +PE A+
Sbjct: 185 DTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSN-GMSKGFGFVNFDNPEDAK 243
Query: 86 RA 87
RA
Sbjct: 244 RA 245
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 12/83 (14%)
Query: 32 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADP 91
+F+GG+++ T +R++F +G++L+A +I D+ TGR +G+GFVTF E A A
Sbjct: 36 LFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTM 91
Query: 92 APVID--------GRRANCNLAS 106
+ I GR+ N A+
Sbjct: 92 SLAIKSMKNQDLYGRKVRVNYAT 114
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++V+VGG+ + +SE ++ + E+ GE+++ ++ K+ +KG+ FVT+R+ E A +A
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 90 DPAPV-IDGRRANC 102
+ GR+ C
Sbjct: 170 ELNNTEFKGRKIKC 183
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++V+VGG+ + +SE ++ + E+ GE+++ ++ K+ +KG+ FVT+R+ E A +A
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 90 DPAPV-IDGRRANC 102
+ GR+ C
Sbjct: 170 ELNNTEFKGRKIKC 183
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++V+VGG+ + +SE ++ + E+ GE+++ ++ K+ +KG+ FVT+R+ E A +A
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 90 DPAPV-IDGRRANC 102
+ GR+ C
Sbjct: 170 ELNNTEFKGRKIKC 183
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR---DPEAARR 86
TK+FV L++ T + + F FG + EA +ITD+NT R KG+GFV+++ + E AR+
Sbjct: 7 TKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
Query: 87 ACADPAPVIDGR 98
A ++DGR
Sbjct: 67 ALN--GRIVDGR 76
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVG LAW SE++ + F++ G ++ A V+ D TG+S+GYGFV++ A A
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 91 PAPV-IDGRRANCNLA 105
V ++GR +LA
Sbjct: 265 MDNVELEGRTLRVSLA 280
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 29 FTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 88
++FVGGL + MR + FG + ++ DK TG SKGYGF ++DP AC
Sbjct: 177 LDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIAC 236
Query: 89 A 89
A
Sbjct: 237 A 237
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
++FV L + T E + +F QFG + +A ++ DK+T RSKG ++ F PE A RA
Sbjct: 330 RLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARA 386
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 32 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD- 90
+FVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+FR+ + A+ A D
Sbjct: 133 IFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDL 192
Query: 91 PAPVIDGRRANCNLAS 106
+ R+ CN A+
Sbjct: 193 TGKWLGSRQIRCNWAT 208
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 40/59 (67%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
K+ V G+ W+ +E ++ Y ++GE+ + +V+ +++TGRS+G+G+VTF + A+ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVG L E SE +R+YF +FG I + + D +G+GFVTF D A R
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 91 PAPV 94
P +
Sbjct: 286 PHEI 289
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 40/59 (67%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
K+ V G+ W+ +E ++ Y ++GE+ + +V+ +++TGRS+G+G+VTF + A+ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVG L E SE +R+YF +FG I + + D +G+GFVTF D A R
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 91 PAPV 94
P +
Sbjct: 286 PHEI 289
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 40/59 (67%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
K+ V G+ W+ +E ++ Y ++GE+ + +V+ +++TGRS+G+G+VTF + A+ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVG L E SE +R+YF +FG I + + D +G+GFVTF D A R
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 91 PAPV 94
P +
Sbjct: 286 PHEI 289
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 40/59 (67%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
K+ V G+ W+ +E ++ Y ++GE+ + +V+ +++TGRS+G+G+VTF + A+ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVG L E SE +R+YF +FG I + + D +G+GFVTF D A R
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 91 PAPV 94
P +
Sbjct: 286 PHEI 289
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVG L ++ SE + + FEQ G + A VI +++T RS+G+GFVT E RA
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 91 PAPV-IDGRRANCNLAS 106
+ +DGR N A+
Sbjct: 183 FSGFELDGRLLTVNKAA 199
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+ +VG L W+ + ++ + F + G++ A V+ D+ TGRS+G+GFVT + A A
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIA- 275
Query: 91 PAPVIDGRRAN 101
+DG+ N
Sbjct: 276 ---ALDGQSFN 283
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 78
+V VG LAW + + F + G++LEA VI D+ +GRS+G+GFVTF
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTF 244
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 78
+V VG LAW + + F + G++LEA VI D+ +GRS+G+GFVTF
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTF 244
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 29 FTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 88
++FVGGL + MR + FG + ++ DK TG SKGYGF ++DP AC
Sbjct: 297 LDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIAC 356
Query: 89 A 89
A
Sbjct: 357 A 357
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 29 FTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 88
++FVGGL + MR + FG + ++ DK TG SKGYGF ++DP AC
Sbjct: 134 LDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIAC 193
Query: 89 A 89
A
Sbjct: 194 A 194
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++V+VGG+ + +SE ++ + E+ GE+++ ++ K+ +KG+ FVT+R+ E A +A
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 90 DPAPV-IDGRRANC 102
+ GR+ C
Sbjct: 170 ELNNTEFKGRKIKC 183
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 29 FTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 88
++FVGGL + MR + FG + ++ DK TG SKGYGF ++DP AC
Sbjct: 282 LDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIAC 341
Query: 89 A 89
A
Sbjct: 342 A 342
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
++FV L + T E + +F QFG + + ++ DK+T RSKG F+ F PE A RA
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARA 956
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
++FVGGL +T E +++ F++ GE+LE + + +T +++GY V F + E A++A ++
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 91 -PAPVIDGRR 99
PVI G+R
Sbjct: 479 MKNPVIRGKR 488
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
++FVGGL +T E +++ F++ GE+LE + + +T +++GY V F + E A++A ++
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 91 -PAPVIDGRR 99
PVI G+R
Sbjct: 479 MKNPVIRGKR 488
>Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr8:13487363-13494759 | 20130731
Length = 815
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 23 PFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPE 82
P D +F + + + + R+F +FGE+L+AV++TD TG+ KG +V F E
Sbjct: 631 PLDDADSRTIFASNVHFAATKDAICRHFNKFGEVLKAVIVTDSITGKPKGAAYVEFMYKE 690
Query: 83 AARRACA 89
AA A +
Sbjct: 691 AADNALS 697
>Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:30979896-30974591 | 20130731
Length = 782
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+VFVGGL E +R+ F + GEI E + + T R+KG+ + F E +RA A+
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 91 -PAPVIDGR 98
PVI+G+
Sbjct: 255 LKNPVINGK 263
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+FVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+FR + A+ A D
Sbjct: 148 NIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIND 207
Query: 91 -PAPVIDGRRANCNLAS 106
+ R+ CN A+
Sbjct: 208 LTGKWLGSRQIRCNWAT 224
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
++FVGGL +T E +++ F++ GE+LE + + +T +++GY V F + E A++A ++
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 91 -PAPVIDGRR 99
PVI G+R
Sbjct: 479 MKNPVIRGKR 488
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K++ G L W+ S+ +R+ F + +L A V+ ++N G+S+GYGFV+F E A +
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 91 PAPV-IDGRRANCNLA 105
V + GR LA
Sbjct: 268 MNGVEVQGRPLRLKLA 283
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K++ G L W+ S+ +R+ F + +L A V+ ++N G+S+GYGFV+F E A +
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 91 PAPV-IDGRRANCNLA 105
V + GR LA
Sbjct: 268 MNGVEVQGRPLRLKLA 283
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 32 VFVGGLAWETQSETMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+FVG LA + ++ F +G + A V+TD NTGRSKGYGFV F D RA ++
Sbjct: 110 IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSE 169
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 32 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
VFV GL T SET+R F++FGE+ + V+ D+ +G SKG+G+V + E A
Sbjct: 46 VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDA 98
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 27 TTFTKVFVGGLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
T+ VFVG LA + ++ F +F I A V+ D NTGRSKGYGFV F D
Sbjct: 211 TSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERT 270
Query: 86 RACAD 90
RA +
Sbjct: 271 RAMTE 275
>Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902513-8908790 | 20130731
Length = 582
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 23 PFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPE 82
P D +FV + + + + R+F +FGE+L+ +++TD TG+ KG +V F E
Sbjct: 504 PTEDVDSRTIFVSNVHFAATKDALSRHFNKFGEVLKVIIVTDAATGQPKGAAYVEFMLKE 563
Query: 83 AARRACADPAPVIDG 97
A AD A +DG
Sbjct: 564 A-----ADNALSLDG 573
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+VFVGGL + + +R+ F + G + E ++ + T ++KG+ F+ F + E A+RA A+
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 91 -PAPVIDGR 98
PVI+G+
Sbjct: 275 LKNPVINGK 283
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+VFVGGL + + +R+ F + G + E ++ + T ++KG+ F+ F + E A+RA A+
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 91 -PAPVIDGR 98
PVI+G+
Sbjct: 275 LKNPVINGK 283
>Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902502-8910404 | 20130731
Length = 685
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 23 PFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPE 82
P D +FV + + + + R+F +FGE+L+ +++TD TG+ KG +V F E
Sbjct: 504 PTEDVDSRTIFVSNVHFAATKDALSRHFNKFGEVLKVIIVTDAATGQPKGAAYVEFMLKE 563
Query: 83 AARRACADPAPVIDG 97
A AD A +DG
Sbjct: 564 A-----ADNALSLDG 573
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+VFVGGL + + +R+ F + G + E ++ + T ++KG+ F+ F + E A+RA A+
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 91 -PAPVIDGR 98
PVI+G+
Sbjct: 276 LKNPVINGK 284
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+VFVGGL + + +R+ F + G + E ++ + T ++KG+ F+ F + E A+RA A+
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 91 -PAPVIDGR 98
PVI+G+
Sbjct: 276 LKNPVINGK 284
>Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC |
chr7:31471924-31467830 | 20130731
Length = 566
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 23 PFGDTTFT-----KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 77
PFGD T +FVG L+ T ET+R+ +FG++ ++ D TG S+GY FV
Sbjct: 51 PFGDPKATGDPYCTLFVGRLSRLTTEETLRKVMSEFGQVKNLRLVRDIVTGASRGYAFVE 110
Query: 78 FRDPEAARRACADPAPVI 95
F RRA D +I
Sbjct: 111 FETEREMRRAYMDAHHLI 128
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC-A 89
K++ G L W S+ +R F++ +L A +I +++ GRS+G+GFVTF E A A
Sbjct: 213 KIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNA 272
Query: 90 DPAPVIDGRRANCNLAS 106
+ GR NLA+
Sbjct: 273 MNGVEVQGRPLRLNLAA 289
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
T +++G L + + + + F+QFGEI+ A VI D+ TG SKGYGFV + D A A
Sbjct: 451 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNA 508