Miyakogusa Predicted Gene

Lj1g3v3404330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3404330.1 tr|C1N088|C1N088_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_4148,36.48,1e-17,no description,Mog1/PsbP,
alpha/beta/alpha sandwich; PsbP,Photosystem II PsbP, oxygen evolving
compl,CUFF.30632.1
         (250 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g116110.1 | photosystem II reaction center PsbP family pro...   378   e-105
Medtr6g034285.1 | CRAL/TRIO domain protein | HC | chr6:11687750-...   123   1e-28

>Medtr3g116110.1 | photosystem II reaction center PsbP family
           protein | HC | chr3:54288323-54290545 | 20130731
          Length = 241

 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/250 (75%), Positives = 210/250 (84%), Gaps = 9/250 (3%)

Query: 1   MASISWSCCLHRRPTISDRTASAADKGFSPPITLEHHKKTPCLLSARNSSIEEGHAVNRR 60
           MASISW  CLH RPT     A+A DKG S PIT+EHHK  P  L    SS EEG A+NRR
Sbjct: 1   MASISWFSCLHIRPT-----ATAGDKGLSSPITVEHHKTRPQNLL---SSSEEGLAINRR 52

Query: 61  QLVFYTSLAAFAAAPSTVLKALALNDVVEDVRIYIDDENKFKIEIPQDWEVGTGDSSGFK 120
           QL+ YTS AA AA+ ST   ALALNDV ED  IY DDENKFKI+IPQ+W++GTG+S+GFK
Sbjct: 53  QLILYTSTAAIAAS-STDSNALALNDVSEDFSIYTDDENKFKIDIPQEWQIGTGESAGFK 111

Query: 121 SLTAFYPKEASSSNVSVAITGLGPDFTKMESFGKVDEFAETLVSGLDRSWRKPPGVAAKL 180
           SLTAFYPKE S+SNVSV ITG+GPDFTKMESFGKV+EFA+TLVSGLDRSW+KPPGVAAKL
Sbjct: 112 SLTAFYPKEQSNSNVSVVITGVGPDFTKMESFGKVEEFADTLVSGLDRSWKKPPGVAAKL 171

Query: 181 INSKSSKGIYYIEYSLQNPGESRRHLYSAIGMATNGWYNRLYTVTGQYVEEETDKYASEI 240
           I+ KSSKG Y+IEY+LQ+PGE R+HLYSAIGM TNGWYNRLYTVTGQY EEETDKYAS+I
Sbjct: 172 IDCKSSKGFYFIEYTLQSPGEGRKHLYSAIGMLTNGWYNRLYTVTGQYGEEETDKYASKI 231

Query: 241 QKAVTSFKFI 250
           QKAV SFKFI
Sbjct: 232 QKAVRSFKFI 241


>Medtr6g034285.1 | CRAL/TRIO domain protein | HC |
           chr6:11687750-11682008 | 20130731
          Length = 400

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 62/68 (91%)

Query: 160 ETLVSGLDRSWRKPPGVAAKLINSKSSKGIYYIEYSLQNPGESRRHLYSAIGMATNGWYN 219
           + LVSGLDRSW+KPPGVAAKLI+ KSSKG Y+IEY+LQ+PGE R+HLYSAIGM T+GWYN
Sbjct: 128 KLLVSGLDRSWKKPPGVAAKLIDCKSSKGFYFIEYTLQSPGEGRKHLYSAIGMLTDGWYN 187

Query: 220 RLYTVTGQ 227
           RLYT TGQ
Sbjct: 188 RLYTATGQ 195