Miyakogusa Predicted Gene

Lj1g3v3388990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3388990.1 tr|Q015Z1|Q015Z1_OSTTA Chloroplast channel
forming outer membrane protein (ISS) (Fragment)
OS=Ostreo,35.2,0.000000000000007, ,CUFF.32014.1
         (167 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g115990.1 | outer envelope pore protein | HC | chr3:542297...   295   1e-80
Medtr3g115990.2 | outer envelope pore protein | HC | chr3:542297...   281   3e-76

>Medtr3g115990.1 | outer envelope pore protein | HC |
           chr3:54229774-54233050 | 20130731
          Length = 178

 Score =  295 bits (755), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/178 (78%), Positives = 160/178 (89%), Gaps = 11/178 (6%)

Query: 1   METSLRYAGDSKALRIHAKEKLRIDTNTFFQVQGELDTRYGQPNSLRALIRHFYPNLSAT 60
           METSLRY GDSKAL+IHAK+K+RIDTNTFFQV+GELDT+ GQPNSLRAL+RHFYP+LSAT
Sbjct: 1   METSLRYGGDSKALKIHAKQKIRIDTNTFFQVRGELDTKNGQPNSLRALVRHFYPDLSAT 60

Query: 61  LGVGMRYDK-----------HEKLRYTVVAKKTFPVTINGLVNFKIKGGCDVDKEFKERK 109
           LGVG++YDK           ++KLRYTV+AKKTF VT +GLVNFKIKG CDVD++FKERK
Sbjct: 61  LGVGVQYDKLNNVGEKRYARNDKLRYTVLAKKTFLVTEDGLVNFKIKGACDVDQDFKERK 120

Query: 110 SRGAAEFSWSVFNFQKDQDVRLRVGYEIFDQVPYLQIRENNWTFNADYKGRWNVRYDL 167
           SRG AEFSW++FNFQKDQDVRLR+GYE F+QVPY+QIRENNWTFNADYKGRWNVRYDL
Sbjct: 121 SRGGAEFSWNIFNFQKDQDVRLRIGYEAFEQVPYVQIRENNWTFNADYKGRWNVRYDL 178


>Medtr3g115990.2 | outer envelope pore protein | HC |
           chr3:54229774-54233038 | 20130731
          Length = 204

 Score =  281 bits (718), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 140/204 (68%), Positives = 160/204 (78%), Gaps = 37/204 (18%)

Query: 1   METSLRYAGDSKALRIHAKEKLRIDTNTFFQV--------------------------QG 34
           METSLRY GDSKAL+IHAK+K+RIDTNTFFQV                          +G
Sbjct: 1   METSLRYGGDSKALKIHAKQKIRIDTNTFFQVITFFQSFLCIIHSRYSTICVCYPNKVRG 60

Query: 35  ELDTRYGQPNSLRALIRHFYPNLSATLGVGMRYDK-----------HEKLRYTVVAKKTF 83
           ELDT+ GQPNSLRAL+RHFYP+LSATLGVG++YDK           ++KLRYTV+AKKTF
Sbjct: 61  ELDTKNGQPNSLRALVRHFYPDLSATLGVGVQYDKLNNVGEKRYARNDKLRYTVLAKKTF 120

Query: 84  PVTINGLVNFKIKGGCDVDKEFKERKSRGAAEFSWSVFNFQKDQDVRLRVGYEIFDQVPY 143
            VT +GLVNFKIKG CDVD++FKERKSRG AEFSW++FNFQKDQDVRLR+GYE F+QVPY
Sbjct: 121 LVTEDGLVNFKIKGACDVDQDFKERKSRGGAEFSWNIFNFQKDQDVRLRIGYEAFEQVPY 180

Query: 144 LQIRENNWTFNADYKGRWNVRYDL 167
           +QIRENNWTFNADYKGRWNVRYDL
Sbjct: 181 VQIRENNWTFNADYKGRWNVRYDL 204