Miyakogusa Predicted Gene

Lj1g3v3388980.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3388980.1 Non Characterized Hit- tr|I1K7A2|I1K7A2_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,86.67,0.00000000000001,PROKAR_LIPOPROTEIN,NULL; coiled-coil,NULL;
seg,NULL; SUBFAMILY NOT NAMED,NULL; RIBOPHORIN I,Ribophor,CUFF.30689.1
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g115980.1 | ribophorin I family protein | HC | chr3:542228...   298   2e-81

>Medtr3g115980.1 | ribophorin I family protein | HC |
           chr3:54222813-54229323 | 20130731
          Length = 617

 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 141/182 (77%), Positives = 154/182 (84%)

Query: 1   MLREPLMLISGFFFLFVACIAYVHADFSISKSSASYLAKLQWEEVQATVRQIHNIISRCL 60
           MLREPLMLISGFFFLF+A I Y+HAD SISK+SASYLAK+QWEEVQAT+ Q+H+I+SRCL
Sbjct: 436 MLREPLMLISGFFFLFLASIVYMHADLSISKTSASYLAKIQWEEVQATIHQVHSIVSRCL 495

Query: 61  TTHDKLEASLRDLSRTGDVQACKATRXXXXXXXXXXXXXXXXXXAFLQSSPQATPVLSKV 120
           TTHDKLEASLRDLSRTGD+Q CKATR                   FLQSSPQA  +L KV
Sbjct: 496 TTHDKLEASLRDLSRTGDIQGCKATRKSVDSSLKELTKELKSPVTFLQSSPQAAQILPKV 555

Query: 121 EEIITKERDLQEKLMAKHSTVVDCYEKKLGGREIENRIASHQQKITALRQEIDDLMDVID 180
           EE+I KERDLQEKLMAKHSTVVDCYEKKLGGREIENRIASHQQKITAL+QEIDDLMD+ID
Sbjct: 556 EEVIAKERDLQEKLMAKHSTVVDCYEKKLGGREIENRIASHQQKITALKQEIDDLMDLID 615

Query: 181 EI 182
           EI
Sbjct: 616 EI 617