Miyakogusa Predicted Gene

Lj1g3v3385820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3385820.1 Non Characterized Hit- tr|B9S263|B9S263_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,44.36,4e-18,coiled-coil,NULL; seg,NULL,CUFF.30603.1
         (165 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g115930.1 | transmembrane protein, putative | HC | chr3:54...   152   1e-37
Medtr5g024680.1 | transmembrane protein, putative | HC | chr5:99...   106   1e-23
Medtr5g007210.1 | transmembrane protein, putative | HC | chr5:12...    57   1e-08

>Medtr3g115930.1 | transmembrane protein, putative | HC |
           chr3:54195222-54187330 | 20130731
          Length = 169

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/144 (59%), Positives = 95/144 (65%), Gaps = 1/144 (0%)

Query: 21  VDHSRVMIKPSGLSQNLNCQGRTQLSLTRRPLTVQATYSDGGRPXXXXXXXXXXXXXXXX 80
           ++HS + IKP  L  N      +  S T RP  V+A YSDGGRP                
Sbjct: 26  MNHSHLKIKPPTLFPNRRRMLLSSSSSTTRPFIVRAAYSDGGRPNSASVFVGGFILGGLV 85

Query: 81  XXXXXXXYAPQISKALAGADKKELMRKLPKFIYDEEKALEKTRKVLAEKIEQLNAAIDEV 140
                  YAPQIS AL G ++KELMRKLPKFIYDEEKALEKTRKVLA KIEQLN+AIDE+
Sbjct: 86  VGALGCVYAPQISNALTGTERKELMRKLPKFIYDEEKALEKTRKVLANKIEQLNSAIDEI 145

Query: 141 SSQLRSEDEGPNGVAVNSDELEAA 164
           SSQLRS D  PNGVAVNSDE+EAA
Sbjct: 146 SSQLRSGDT-PNGVAVNSDEVEAA 168


>Medtr5g024680.1 | transmembrane protein, putative | HC |
           chr5:9921144-9916334 | 20130731
          Length = 166

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 66/77 (85%), Gaps = 1/77 (1%)

Query: 88  YAPQISKALAGADKKELMRKLPKFIYDEEKALEKTRKVLAEKIEQLNAAIDEVSSQLRSE 147
           YAP+ISKALAGA+ KELM+KLPKFIYDEEKALEKTRK+L+EKI QLN+AID VS+ LRS 
Sbjct: 90  YAPKISKALAGAEGKELMKKLPKFIYDEEKALEKTRKMLSEKIAQLNSAIDGVSANLRS- 148

Query: 148 DEGPNGVAVNSDELEAA 164
           DE  N  AV S+E+ A+
Sbjct: 149 DEDKNESAVVSEEIGAS 165


>Medtr5g007210.1 | transmembrane protein, putative | HC |
           chr5:1243259-1247003 | 20130731
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 88  YAPQISKALAGADKKELMR-KLPKFIYDEEKALEKTRKVLAEKIEQLNAAIDEVSSQLRS 146
           +APQI K+L   D+    R + P + YDE   LE+TR+ L +KI QLN+AID +SS+LR 
Sbjct: 86  FAPQIRKSLLNEDEYGFRRARRPPYYYDE--GLERTRETLNDKIRQLNSAIDNISSRLRG 143

Query: 147 EDEGP 151
             + P
Sbjct: 144 NKKVP 148