Miyakogusa Predicted Gene

Lj1g3v3384780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3384780.1 Non Characterized Hit- tr|D8TWF0|D8TWF0_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,35.8,8e-16,seg,NULL; DUF3456,Domain of unknown function DUF3456;
MIR-INTERACTING SAPOSIN-LIKE PROTEIN,NULL,CUFF.30619.1
         (187 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g115880.1 | canopy-like protein | HC | chr3:54161291-54164...   225   2e-59
Medtr3g115880.3 | canopy-like protein | HC | chr3:54161319-54164...   197   7e-51
Medtr3g115880.2 | canopy-like protein | HC | chr3:54161319-54164...   195   3e-50

>Medtr3g115880.1 | canopy-like protein | HC | chr3:54161291-54164708
           | 20130731
          Length = 180

 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 126/166 (75%)

Query: 16  VLHTAPSNAIDDKCAACKAVAEELEIGLSREKPRNHLDMRHRLDSKGQRQGKLIDYRVSD 75
           +L    S+A+DDKCAACKAVA ELEIGL+REKPRNHLDMRHRLD+KGQRQGKLIDYR+S+
Sbjct: 12  LLLIGMSHAVDDKCAACKAVAGELEIGLAREKPRNHLDMRHRLDAKGQRQGKLIDYRISE 71

Query: 76  LRVVELLDGLCEKMQDYTLMIDTDTYEWFKVDSWDNLTKNKQEARAYSKDISSYCGRXXX 135
           LRVVELLD LCEKMQDYTL I  D++EW+KV SWDNL  NKQEARA+SKDISSYCGR   
Sbjct: 72  LRVVELLDDLCEKMQDYTLRIFPDSHEWYKVGSWDNLRTNKQEARAHSKDISSYCGRLLE 131

Query: 136 XXXXXXXXXIXXXXXXXXXXXXXLCQDLSKHCSRTRVSHEAEVVDD 181
                    I             LCQDLSKHC +T VS EAEVV+D
Sbjct: 132 ETEDELAELIKKGSVKVGDVSKVLCQDLSKHCDQTSVSDEAEVVED 177


>Medtr3g115880.3 | canopy-like protein | HC | chr3:54161319-54164708
           | 20130731
          Length = 128

 Score =  197 bits (500), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 94/117 (80%), Positives = 105/117 (89%)

Query: 16  VLHTAPSNAIDDKCAACKAVAEELEIGLSREKPRNHLDMRHRLDSKGQRQGKLIDYRVSD 75
           +L    S+A+DDKCAACKAVA ELEIGL+REKPRNHLDMRHRLD+KGQRQGKLIDYR+S+
Sbjct: 12  LLLIGMSHAVDDKCAACKAVAGELEIGLAREKPRNHLDMRHRLDAKGQRQGKLIDYRISE 71

Query: 76  LRVVELLDGLCEKMQDYTLMIDTDTYEWFKVDSWDNLTKNKQEARAYSKDISSYCGR 132
           LRVVELLD LCEKMQDYTL I  D++EW+KV SWDNL  NKQEARA+SKDISSYCGR
Sbjct: 72  LRVVELLDDLCEKMQDYTLRIFPDSHEWYKVGSWDNLRTNKQEARAHSKDISSYCGR 128


>Medtr3g115880.2 | canopy-like protein | HC | chr3:54161319-54164708
           | 20130731
          Length = 132

 Score =  195 bits (495), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 93/116 (80%), Positives = 104/116 (89%)

Query: 16  VLHTAPSNAIDDKCAACKAVAEELEIGLSREKPRNHLDMRHRLDSKGQRQGKLIDYRVSD 75
           +L    S+A+DDKCAACKAVA ELEIGL+REKPRNHLDMRHRLD+KGQRQGKLIDYR+S+
Sbjct: 12  LLLIGMSHAVDDKCAACKAVAGELEIGLAREKPRNHLDMRHRLDAKGQRQGKLIDYRISE 71

Query: 76  LRVVELLDGLCEKMQDYTLMIDTDTYEWFKVDSWDNLTKNKQEARAYSKDISSYCG 131
           LRVVELLD LCEKMQDYTL I  D++EW+KV SWDNL  NKQEARA+SKDISSYCG
Sbjct: 72  LRVVELLDDLCEKMQDYTLRIFPDSHEWYKVGSWDNLRTNKQEARAHSKDISSYCG 127