Miyakogusa Predicted Gene

Lj1g3v3384730.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3384730.1 Non Characterized Hit- tr|B9SU48|B9SU48_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,75.47,1e-16,HOMEOBOX_2,Homeodomain; no description,Homeodomain-like;
Homeobox,Homeodomain; Homeodomain,Homeodoma,CUFF.30596.1
         (218 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g115620.1 | wuschel-related homeobox protein | HC | chr3:5...   307   4e-84
Medtr1g115315.1 | wuschel-related homeobox protein | HC | chr1:5...   231   5e-61
Medtr1g115315.2 | wuschel-related homeobox protein | HC | chr1:5...   230   6e-61
Medtr7g023810.1 | homeodomain protein HB2 | HC | chr7:7798636-77...   144   8e-35
Medtr4g084550.1 | wuschel-related homeobox protein | HC | chr4:3...    71   1e-12
Medtr2g015000.1 | wuschel homeobox protein | HC | chr2:4393059-4...    70   1e-12
Medtr7g025010.1 | wuschel-related homeobox protein, putative | L...    67   9e-12
Medtr8g107210.1 | stenofolia-like protein | HC | chr8:45305362-4...    66   3e-11
Medtr4g063735.1 | wuschel-related homeobox protein | HC | chr4:2...    65   5e-11
Medtr4g088080.1 | wuschel homeobox protein | LC | chr4:34693672-...    64   8e-11
Medtr4g088070.1 | wuschel homeobox protein | LC | chr4:34685878-...    62   3e-10
Medtr1g019130.2 | wuschel-related homeobox protein | HC | chr1:5...    62   4e-10
Medtr1g019130.1 | wuschel-related homeobox protein | HC | chr1:5...    61   8e-10
Medtr5g081990.1 | wuschel-related homeobox protein | HC | chr5:3...    60   2e-09
Medtr7g060630.1 | wuschel-related homeobox protein | HC | chr7:2...    59   3e-09
Medtr5g021930.1 | wuschel-related homeobox protein | HC | chr5:8...    57   1e-08
Medtr6g027390.1 | wuschel-related homeobox protein | HC | chr6:9...    54   1e-07
Medtr7g086940.1 | wuschel-related homeobox protein | HC | chr7:3...    48   6e-06

>Medtr3g115620.1 | wuschel-related homeobox protein | HC |
           chr3:54113734-54116409 | 20130731
          Length = 215

 Score =  307 bits (787), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 176/220 (80%), Gaps = 7/220 (3%)

Query: 1   MEGEQHDISNGGGLYVKV-MTDEQMELLRQQISVYATICDSLVEMHKAITTQQDLAGLRL 59
           ME E  +   GGGLYVKV MTDEQMELLRQQISVY TI D LVEMHK+ITTQ DLAGLRL
Sbjct: 1   MEAEHENSGGGGGLYVKVIMTDEQMELLRQQISVYTTISDQLVEMHKSITTQHDLAGLRL 60

Query: 60  GNLYCDPLMV-CSGHKITARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHG 118
           GNLYCDPLM+ CSGHKIT+RQRWTP P+QLQ+LE+IFD+GNGTP+KQKIK+I IELGQHG
Sbjct: 61  GNLYCDPLMMACSGHKITSRQRWTPMPIQLQILERIFDEGNGTPTKQKIKDITIELGQHG 120

Query: 119 QISETNVYNWFQNRRARSKRKQLAPTTPSHXXXXXXXXXXXXSPKEKRISAAESVQVLQP 178
           QISETNVYNWFQNRRARSKRKQ   + P+             SPKE + +  ES QV Q 
Sbjct: 121 QISETNVYNWFQNRRARSKRKQ--SSVPAGNHAEPEADTEVESPKENK-TCEESDQV-QF 176

Query: 179 YENSSSPHRLKDFYIQSPDIGFEQLLGKIEAGGCFSSYFL 218
           +E S SPHR+KD Y+QSPDIGFE LLGKIE  GC++SYFL
Sbjct: 177 FE-SLSPHRVKDMYLQSPDIGFEHLLGKIEVAGCYNSYFL 215


>Medtr1g115315.1 | wuschel-related homeobox protein | HC |
           chr1:52025791-52029215 | 20130731
          Length = 264

 Score =  231 bits (588), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 107/141 (75%), Positives = 124/141 (87%), Gaps = 3/141 (2%)

Query: 1   MEGEQHDISNGG--GLYVKVMTDEQMELLRQQISVYATICDSLVEMHKAITTQQDLAGLR 58
           ME ++  + NG    +YVKVMTDEQ+E LR+QI+VYATIC+ LVEMHK ++ QQDLAG+R
Sbjct: 5   MEWQKQQVQNGNVEAMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLSAQQDLAGVR 64

Query: 59  LGNLYCDPLMVCSGHKITARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHG 118
           LGNLYCD LM  +GHKIT+RQRWTPTP+QLQ+LE+IFDQGNGTPSK+KIKEIA EL QHG
Sbjct: 65  LGNLYCDSLMT-AGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHG 123

Query: 119 QISETNVYNWFQNRRARSKRK 139
           QISETNVYNWFQNRRARSKRK
Sbjct: 124 QISETNVYNWFQNRRARSKRK 144


>Medtr1g115315.2 | wuschel-related homeobox protein | HC |
           chr1:52025869-52029102 | 20130731
          Length = 262

 Score =  230 bits (587), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 107/141 (75%), Positives = 124/141 (87%), Gaps = 3/141 (2%)

Query: 1   MEGEQHDISNGG--GLYVKVMTDEQMELLRQQISVYATICDSLVEMHKAITTQQDLAGLR 58
           ME ++  + NG    +YVKVMTDEQ+E LR+QI+VYATIC+ LVEMHK ++ QQDLAG+R
Sbjct: 5   MEWQKQQVQNGNVEAMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLSAQQDLAGVR 64

Query: 59  LGNLYCDPLMVCSGHKITARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHG 118
           LGNLYCD LM  +GHKIT+RQRWTPTP+QLQ+LE+IFDQGNGTPSK+KIKEIA EL QHG
Sbjct: 65  LGNLYCDSLMT-AGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHG 123

Query: 119 QISETNVYNWFQNRRARSKRK 139
           QISETNVYNWFQNRRARSKRK
Sbjct: 124 QISETNVYNWFQNRRARSKRK 144


>Medtr7g023810.1 | homeodomain protein HB2 | HC |
           chr7:7798636-7797897 | 20130731
          Length = 183

 Score =  144 bits (362), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 73/135 (54%), Positives = 93/135 (68%), Gaps = 21/135 (15%)

Query: 9   SNGGGLYVKVMTDEQMELLRQQISVYATICDSLVEMHKAITTQQDLA---GLRLGNLYCD 65
           +N G + V VMT+EQ+E LR+QI+VY+ I + L++ HK +++QQDL      RL      
Sbjct: 12  ANVGMMQVNVMTNEQVETLRKQIAVYSVISEQLIQTHKTLSSQQDLTLTGSTRL------ 65

Query: 66  PLMVCSGHKITARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNV 125
                       RQRWTPTP+QLQ LE+IF+   GTPSK+KIKEI  +L +HGQISET+V
Sbjct: 66  ------------RQRWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGQISETSV 113

Query: 126 YNWFQNRRARSKRKQ 140
           YNWFQNRRARSK KQ
Sbjct: 114 YNWFQNRRARSKGKQ 128


>Medtr4g084550.1 | wuschel-related homeobox protein | HC |
           chr4:32905916-32907479 | 20130731
          Length = 184

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 47/61 (77%)

Query: 80  RWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRK 139
           RW+PTP+QL +LE+++ QG  TPS ++I++IA +L Q G+I   NV+ WFQN +AR ++K
Sbjct: 64  RWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQK 123

Query: 140 Q 140
           +
Sbjct: 124 R 124


>Medtr2g015000.1 | wuschel homeobox protein | HC |
           chr2:4393059-4395325 | 20130731
          Length = 457

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 46/70 (65%)

Query: 70  CSGHKITARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWF 129
           C       + RW P P Q+++LE IF+ G   P +++I++I  +L ++GQ+ + NV+ WF
Sbjct: 45  CEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWF 104

Query: 130 QNRRARSKRK 139
           QNR++RSK K
Sbjct: 105 QNRKSRSKHK 114


>Medtr7g025010.1 | wuschel-related homeobox protein, putative | LC |
           chr7:8283410-8286927 | 20130731
          Length = 590

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 45/63 (71%)

Query: 78  RQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSK 137
           + RW P P Q+++LE IF+ G   P +++I +I  +L + GQ+ + NV+ WFQNR++RSK
Sbjct: 45  KPRWNPKPQQIRILEAIFNSGMVNPPREEITKIREQLQEFGQVGDANVFYWFQNRKSRSK 104

Query: 138 RKQ 140
           +K+
Sbjct: 105 QKK 107


>Medtr8g107210.1 | stenofolia-like protein | HC |
           chr8:45305362-45303362 | 20130731
          Length = 358

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 45/66 (68%)

Query: 75  ITARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRA 134
           +    RW PTP QL+ LE+++ +G  TPS ++I++I  +L + G+I   NV+ WFQN +A
Sbjct: 91  VVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRKFGKIEGKNVFYWFQNHKA 150

Query: 135 RSKRKQ 140
           R ++K+
Sbjct: 151 RERQKR 156


>Medtr4g063735.1 | wuschel-related homeobox protein | HC |
           chr4:23615955-23617663 | 20130731
          Length = 257

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 80  RWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRK 139
           RW PT  Q+ MLE ++ QG  TPS ++I+EI   L  +G I   NV+ WFQN +AR ++K
Sbjct: 25  RWNPTKEQISMLENLYKQGIKTPSAEEIQEITARLRVYGHIEGKNVFYWFQNHKARQRQK 84

Query: 140 Q 140
           Q
Sbjct: 85  Q 85


>Medtr4g088080.1 | wuschel homeobox protein | LC |
           chr4:34693672-34695281 | 20130731
          Length = 319

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%)

Query: 77  ARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARS 136
            R RW P P Q+ +LE I++ G   P + +IK+I  +L + GQ+ +++V+ WFQNR+ RS
Sbjct: 37  PRPRWIPKPEQIHILEAIYNSGTTNPRRDEIKKIREQLEEFGQVGDSSVFYWFQNRKYRS 96

Query: 137 KRKQLA 142
           K  ++ 
Sbjct: 97  KTNKVP 102


>Medtr4g088070.1 | wuschel homeobox protein | LC |
           chr4:34685878-34688712 | 20130731
          Length = 413

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 42/63 (66%)

Query: 78  RQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSK 137
           R RW P P Q+++LE I++ G   P   +IK+I  +L + GQI + +V+ WFQNR+++ K
Sbjct: 27  RPRWIPKPEQIRILEAIYNSGMKNPPVDEIKKIREQLQEFGQIGDASVFYWFQNRKSKGK 86

Query: 138 RKQ 140
            K+
Sbjct: 87  NKK 89


>Medtr1g019130.2 | wuschel-related homeobox protein | HC |
           chr1:5704096-5705687 | 20130731
          Length = 228

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 43/61 (70%)

Query: 80  RWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRK 139
           RW PT  Q+ +LE ++  G  TP+ Q+I++I ++L ++G+I   NV+ WFQN +AR ++K
Sbjct: 90  RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQK 149

Query: 140 Q 140
           Q
Sbjct: 150 Q 150


>Medtr1g019130.1 | wuschel-related homeobox protein | HC |
           chr1:5704096-5705687 | 20130731
          Length = 236

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 43/61 (70%)

Query: 80  RWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRK 139
           RW PT  Q+ +LE ++  G  TP+ Q+I++I ++L ++G+I   NV+ WFQN +AR ++K
Sbjct: 90  RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQK 149

Query: 140 Q 140
           Q
Sbjct: 150 Q 150


>Medtr5g081990.1 | wuschel-related homeobox protein | HC |
           chr5:35185060-35183966 | 20130731
          Length = 184

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 42/61 (68%)

Query: 80  RWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRK 139
           RW PT  Q+++L ++F  G  TPS  +I++I+ +L  +G+I   NV+ WFQN +AR ++K
Sbjct: 33  RWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQK 92

Query: 140 Q 140
           +
Sbjct: 93  R 93


>Medtr7g060630.1 | wuschel-related homeobox protein | HC |
           chr7:21930278-21929162 | 20130731
          Length = 206

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%)

Query: 80  RWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRK 139
           RW+PT  QL +LE+++  G  TPS  +I++I   L  +G+I   NV+ WFQN +AR ++K
Sbjct: 8   RWSPTTEQLMILEELYRSGIRTPSAVQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67


>Medtr5g021930.1 | wuschel-related homeobox protein | HC |
           chr5:8555099-8553751 | 20130731
          Length = 302

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 80  RWTPTPLQLQMLEQIF-DQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKR 138
           RWTPT  Q+++L+ ++ + G  +PS ++I+ I+  L Q+G+I   NV+ WFQN +AR ++
Sbjct: 30  RWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQ 89

Query: 139 KQ 140
           K+
Sbjct: 90  KK 91


>Medtr6g027390.1 | wuschel-related homeobox protein | HC |
           chr6:9379269-9376397 | 20130731
          Length = 300

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 34/58 (58%)

Query: 76  TARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRR 133
           T R RWTP P Q+ +LE IF+ G   P K +   I   L + G + + NV+ WFQNRR
Sbjct: 28  TVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRR 85


>Medtr7g086940.1 | wuschel-related homeobox protein | HC |
           chr7:33813041-33816667 | 20130731
          Length = 272

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 77  ARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRR 133
            R RWTP P Q+ +LE IF+ G   P K++  +I   L + G + + NV+ WFQNRR
Sbjct: 25  VRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRR 81