Miyakogusa Predicted Gene
- Lj1g3v3382460.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3382460.1 Non Characterized Hit- tr|F6HPY1|F6HPY1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,94.37,2e-19,RS25A_ARATH_Q9SIK2;,Ribosomal protein S25; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,Ribosomal prot,CUFF.30602.1
(108 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g086610.1 | ribosomal protein S25 | HC | chr2:36417795-364... 135 7e-33
Medtr4g070600.2 | ribosomal protein S25 | HC | chr4:26591042-265... 134 1e-32
Medtr4g070600.1 | ribosomal protein S25 | HC | chr4:26591072-265... 134 1e-32
Medtr6g015615.1 | ribosomal protein S25 | HC | chr6:5304809-5303... 51 2e-07
Medtr3g117040.1 | ribosomal protein S25 | HC | chr3:54730428-547... 51 2e-07
>Medtr2g086610.1 | ribosomal protein S25 | HC |
chr2:36417795-36418729 | 20130731
Length = 107
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 62/72 (86%), Positives = 71/72 (98%)
Query: 37 VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVNGSLARKAIRELMARGSIRMVSSH 96
VNNMVLFDQGTYDKLL+EAPK+KLITPS+LSDRLR+NGSLAR+AIR+LMARG IR+VS+H
Sbjct: 36 VNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMARGLIRLVSAH 95
Query: 97 ASQQIYTRATNT 108
+SQQIYTRATNT
Sbjct: 96 SSQQIYTRATNT 107
>Medtr4g070600.2 | ribosomal protein S25 | HC |
chr4:26591042-26588242 | 20130731
Length = 106
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 71/72 (98%)
Query: 37 VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVNGSLARKAIRELMARGSIRMVSSH 96
VNNMVLFDQGTYDKLL+EAPK+KLITPS+LSDRLR+NGSLAR+AIR+LMA+G IR+VS+H
Sbjct: 35 VNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMAKGLIRLVSAH 94
Query: 97 ASQQIYTRATNT 108
+SQQIYTRATNT
Sbjct: 95 SSQQIYTRATNT 106
>Medtr4g070600.1 | ribosomal protein S25 | HC |
chr4:26591072-26587925 | 20130731
Length = 107
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 71/72 (98%)
Query: 37 VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVNGSLARKAIRELMARGSIRMVSSH 96
VNNMVLFDQGTYDKLL+EAPK+KLITPS+LSDRLR+NGSLAR+AIR+LMA+G IR+VS+H
Sbjct: 36 VNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMAKGLIRLVSAH 95
Query: 97 ASQQIYTRATNT 108
+SQQIYTRATNT
Sbjct: 96 SSQQIYTRATNT 107
>Medtr6g015615.1 | ribosomal protein S25 | HC |
chr6:5304809-5303882 | 20130731
Length = 86
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 27/37 (72%), Gaps = 9/37 (24%)
Query: 37 VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVN 73
VNNMVLFDQ TYD KL+TPS+LSDRLRVN
Sbjct: 48 VNNMVLFDQATYD---------KLVTPSVLSDRLRVN 75
>Medtr3g117040.1 | ribosomal protein S25 | HC |
chr3:54730428-54729491 | 20130731
Length = 86
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 27/37 (72%), Gaps = 9/37 (24%)
Query: 37 VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVN 73
VNNMVLFDQ TYD KL+TPS+LSDRLRVN
Sbjct: 48 VNNMVLFDQATYD---------KLVTPSVLSDRLRVN 75