Miyakogusa Predicted Gene

Lj1g3v3330680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3330680.1 Non Characterized Hit- tr|C3YPG3|C3YPG3_BRAFL
Putative uncharacterized protein OS=Branchiostoma flor,30.43,1e-18,GB
DEF: HYPOTHETICAL PROTEIN,NULL; FAMILY NOT NAMED,NULL; seg,NULL;
zf-primase,Zinc finger, Mcm10/Dn,CUFF.30484.1
         (418 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g117880.1 | minichromosome maintenance protein | HC | chr3...   555   e-158

>Medtr3g117880.1 | minichromosome maintenance protein | HC |
           chr3:55188666-55185471 | 20130731
          Length = 412

 Score =  555 bits (1431), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 281/399 (70%), Positives = 315/399 (78%), Gaps = 6/399 (1%)

Query: 21  RVLETPPGSPSPGYLTDSDSDGAPNQRDKNPDMSVFRNAVQDCXXXXXXXXXXXXXXXXX 80
           RV ETPP SPSP    D D D    +  + PDMSVFR+AVQDC                 
Sbjct: 19  RVPETPPASPSP---LDVDDDAVSYKHREKPDMSVFRDAVQDCLHSQPSNPNPNPKSITK 75

Query: 81  ATHAKDSDVEKFSGLRIRDQLLTPAELRDSFSDIRFVRLPVIKNLFIGDSFSGSWATVGV 140
                D  ++KFSGLRI +Q LTPAELR+S  DIRFVRLPVIKNL  GDSFSGSW TVGV
Sbjct: 76  PL-TDDPQLDKFSGLRITNQCLTPAELRESVQDIRFVRLPVIKNLVNGDSFSGSWVTVGV 134

Query: 141 LTEKGIQRTSSSGKGYCIWKIGCLDENTVSLFLFGDAYLRNKNEQAGAVFALFDCSVRKD 200
           LTEKGIQ+TSS+GK YCIWKIG LDENT+SLFLFG+AY RN  E+ G VFALF+ +VRKD
Sbjct: 135 LTEKGIQKTSSNGKSYCIWKIGSLDENTISLFLFGNAYQRNCQEKEGTVFALFNSTVRKD 194

Query: 201 AKGNGFSLSIYSPSQIKKMGTSVDYGVCKGGRADGMACTMVINKRHGAYCKFHKSKTSEK 260
           AKGNGFSLSIYSP+QI KMGTSVDYGVCKG RADGM+CT+ INKR G YCK+HKSK+SEK
Sbjct: 195 AKGNGFSLSIYSPNQIMKMGTSVDYGVCKGKRADGMSCTLAINKRQGTYCKYHKSKSSEK 254

Query: 261 YSTTRTELKGGNLRTAFRPRDQYLRSEGIFVVDPLADKTNLKKSQPVKLMSVDGLRKALS 320
           YST RTELKGGNLRTAFRPRD YL+SEGI++VDPLADKTNLKKS+PVKL+SVDG+RKALS
Sbjct: 255 YSTVRTELKGGNLRTAFRPRD-YLKSEGIYLVDPLADKTNLKKSKPVKLLSVDGIRKALS 313

Query: 321 NAGKVTTTIRSQGIRFLSEVAGNSDPKITNKGPKTPKERRTSAEKRKSSFMNVG-SSVIR 379
           NAGKVTT   SQGIRFLSEVAG  DPK+  K PKTP ++     KRKSS +N+G SSVIR
Sbjct: 314 NAGKVTTASHSQGIRFLSEVAGKFDPKMMKKEPKTPNDQSKCTTKRKSSSVNMGYSSVIR 373

Query: 380 NQQFDVKRKKTDGQDLVDKTTKSSGKMIELDFVSSDEDF 418
           NQQ DVK+ KT+ Q  VDK TKS+GKMIELD +SSDEDF
Sbjct: 374 NQQLDVKKAKTERQVFVDKATKSTGKMIELDLISSDEDF 412