Miyakogusa Predicted Gene

Lj1g3v3330210.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3330210.1 tr|G7J985|G7J985_MEDTR Cytoplasmic tRNA
2-thiolation protein OS=Medicago truncatula GN=MTR_3g118250
,87.93,0,ATP_bind_3,tRNA(Ile)-lysidine/2-thiocytidine synthase; no
description,Rossmann-like alpha/beta/alpha,CUFF.30464.1
         (349 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g118250.1 | cytoplasmic tRNA 2-thiolation protein | HC | c...   610   e-175

>Medtr3g118250.1 | cytoplasmic tRNA 2-thiolation protein | HC |
           chr3:55355246-55357277 | 20130731
          Length = 348

 Score =  610 bits (1573), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/348 (85%), Positives = 314/348 (90%), Gaps = 3/348 (0%)

Query: 4   EGERKRRSLCCVCNERRPSLKRPKTLEHICRECFYTVFEDEIHQVIVTNNLFRRGERVAI 63
           EG+R  R +CC+CNERR SLKRPKTL+ ICRECFY  FEDEIHQ+IV N LF RG+R+AI
Sbjct: 2   EGKRSLR-MCCLCNERRASLKRPKTLQQICRECFYLAFEDEIHQLIVDNRLFTRGDRIAI 60

Query: 64  GASGGKDSTVLAYVLSKLNRVHDYGLHLFLLSVDEGITGYRDDSLQTVHRNQIQYGLPLQ 123
           GASGGKDSTVLAYVLSKLNRVHDYGLHLFLLSVDEGITGYRDDSL+TVHRNQI+YGLPL+
Sbjct: 61  GASGGKDSTVLAYVLSKLNRVHDYGLHLFLLSVDEGITGYRDDSLETVHRNQIEYGLPLK 120

Query: 124 VVSYMDLYGWTMDDIVKLIGLKNNCTFCGVFRRQALDRGAALLKADKLVTGHNADDIAET 183
           +VSY DLYGWTMD+IVKLIGLKNNCTFCGVFRRQALDRGAA LKADK+VTGHNADDIAET
Sbjct: 121 IVSYKDLYGWTMDEIVKLIGLKNNCTFCGVFRRQALDRGAAFLKADKVVTGHNADDIAET 180

Query: 184 VLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKRLDYFSTECIYS 243
           VLLNILRGDIARLSRC+SI TGEDGPIPRCKPFKYTYEKEIVMYAYFK+LDYFSTECIYS
Sbjct: 181 VLLNILRGDIARLSRCSSIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYS 240

Query: 244 PNAYRGFAREFIKDLERMRPRAILDIIKSGENFRISTTTKMPEQGTCERCGYISSQKWCK 303
           PNAYRGFAREFIKDLER+RPRAILDIIKSGENFRISTTTKMPEQG CERCGYISSQKWCK
Sbjct: 241 PNAYRGFAREFIKDLERIRPRAILDIIKSGENFRISTTTKMPEQGFCERCGYISSQKWCK 300

Query: 304 ACVLLDGLNRGLPKLXXXXXXXXX--XXXXXXXXXKSIESKQCGTLDF 349
           ACVLLDGLNRGLPKL                    KSIESKQCG+LDF
Sbjct: 301 ACVLLDGLNRGLPKLGIGRSRVAIGFKEENKSHGTKSIESKQCGSLDF 348