Miyakogusa Predicted Gene

Lj1g3v3330190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3330190.1 Non Characterized Hit- tr|I1JSC1|I1JSC1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.16027
PE,86.62,0,SIGMA70_2,RNA polymerase sigma-70 factor; sigma70-ECF: RNA
polymerase sigma factor, sigma-70,RNA pol,CUFF.30455.1
         (565 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g118290.1 | RNA polymerase sigma factor | HC | chr3:553778...   644   0.0  
Medtr1g063850.1 | RNA polymerase sigma factor | HC | chr1:280302...   240   3e-63
Medtr7g101840.1 | RNA polymerase sigma factor | HC | chr7:410664...   234   2e-61
Medtr1g007370.1 | RNA polymerase sigma factor | HC | chr1:310765...   200   4e-51
Medtr3g033420.1 | RNA polymerase sigma factor | HC | chr3:106852...   161   1e-39
Medtr0172s0030.1 | RNA polymerase sigma factor | HC | scaffold01...   159   9e-39
Medtr0172s0030.2 | RNA polymerase sigma factor | HC | scaffold01...   159   9e-39
Medtr1g007370.2 | RNA polymerase sigma factor | HC | chr1:310765...   122   8e-28
Medtr3g090900.1 | RNA polymerase sigma factor | HC | chr3:412740...   119   1e-26
Medtr3g090900.2 | RNA polymerase sigma factor | HC | chr3:412740...    87   3e-17
Medtr3g090900.3 | RNA polymerase sigma factor | HC | chr3:412740...    74   4e-13
Medtr3g033150.1 | RNA polymerase sigma factor | HC | chr3:105390...    70   4e-12

>Medtr3g118290.1 | RNA polymerase sigma factor | HC |
           chr3:55377817-55374030 | 20130731
          Length = 572

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/436 (74%), Positives = 354/436 (81%), Gaps = 7/436 (1%)

Query: 135 PQVPSKSDNLLLNWIQHMEAEDV----VAGGSMGAGAEVMEAVDISPSEEEF---DDAXX 187
           PQ+PS  +NLLL W+QHMEA +     V+  +  AG ++ME + ISP++E+    DD   
Sbjct: 137 PQLPSTPENLLLKWVQHMEAAEYAAAAVSIATGPAGPDIMEHLHISPNQEDDFNDDDEPT 196

Query: 188 XXXXXXXXXXXXSNSITARSSRQTERKAKRVRATEKATTNIVSFKSGSTSRKKRVPVQEV 247
                         SI ARS RQTERKA+RVRA+ KA TNIVSF+SGST+RKKRV  QEV
Sbjct: 197 SEELEDVEEQLYDTSIDARSGRQTERKARRVRASGKAATNIVSFRSGSTTRKKRVRTQEV 256

Query: 248 DYSDPXXXXXXXXXXXXXXXXXEEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAV 307
           DYSDP                 EEI+ SEGIQDLIKLEKLQEDLAEKCG QPTFAQWA +
Sbjct: 257 DYSDPLRYLRTTTRTTRLLTTSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATM 316

Query: 308 AGVDQKTLRKRLNYGIFCKEKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 367
           AGVDQKTLRKRLNYG+FCKEKMIKSNIRLVIS+AKNYQG+GM+LQDLVQEGCRGLVRGAE
Sbjct: 317 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 376

Query: 368 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 427
           K+DASKGFKFSTYAHWWIKQAVRKSLS QSRTIRLPFHMV ATY+VKEARKQLYSENGR 
Sbjct: 377 KYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQ 436

Query: 428 PDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIK 487
           PDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQK+GINQ+LK SEV+ADPEAETAEEQLIK
Sbjct: 437 PDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIK 496

Query: 488 QFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFXX 547
           QFMKKDLEKVLDSLNPREKQVI+WRFGMDDGRMKTLQEIGEM+GVSRERIRQIESCAF  
Sbjct: 497 QFMKKDLEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRK 556

Query: 548 XXXXXXXXXXXXYLVS 563
                       Y VS
Sbjct: 557 LKNKKRAKHLQQYFVS 572


>Medtr1g063850.1 | RNA polymerase sigma factor | HC |
           chr1:28030240-28023352 | 20130731
          Length = 561

 Score =  240 bits (612), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 211/348 (60%), Gaps = 7/348 (2%)

Query: 204 TARSSRQTERKAKRVRATEKATTNIVSFKSGSTSRKKRVPVQE-----VDYSDPXXXXXX 258
           T RS+R  ER+AK  +  +    +  ++  G  + ++++ VQ+     ++ SDP      
Sbjct: 195 TVRSTRLRERRAKERKVPKLKVKDKETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQ 254

Query: 259 XXXXXXXXXXXEEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKR 318
                      +E +L   IQ+L++LE L+  L  + G +PT A+WA  AG++ + ++ +
Sbjct: 255 SPESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQ 314

Query: 319 LNYGIFCKEKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 378
           L  G   +EK+I++N+RLV  IAK+YQG G++++DL+QEG  GL++  +KF    G +F+
Sbjct: 315 LRCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGCRFA 374

Query: 379 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR-HPDDEEVAEAT 437
           +YA+WWIKQA+RK++ + SRTIRLP  +     +V EA+K LY E G  +P  EE+A   
Sbjct: 375 SYAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKK-LYKEEGNLNPTKEELARRV 433

Query: 438 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKV 497
           G+S  ++  +L   + P S++  +G   +    E+ AD   E+    + KQ M++ +  V
Sbjct: 434 GISPDKVDRLLFVARIPISMQNTVGSETDTTFQEITADCAIESPNMSVAKQLMRRHVLNV 493

Query: 498 LDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 545
           L+ L P+E+++IR RFG +DG  K+L EIGE+ G+SRER+RQ+ES A 
Sbjct: 494 LNILRPKERRIIRLRFGFEDGEEKSLSEIGEIFGLSRERVRQLESRAL 541


>Medtr7g101840.1 | RNA polymerase sigma factor | HC |
           chr7:41066429-41071150 | 20130731
          Length = 557

 Score =  234 bits (597), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/276 (42%), Positives = 176/276 (63%)

Query: 270 EEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKEKM 329
           EE +L   IQDL KL++ +  L    G +PT A+WA   G+  + L+KRL+ G   K+K+
Sbjct: 262 EESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRDLQKRLHCGNRSKDKL 321

Query: 330 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 389
           I +N+RLV+ IAK YQG G++LQDL+QEG  GL+R  EKF    G +FSTYA+WWI+Q +
Sbjct: 322 IHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAGCRFSTYAYWWIRQTI 381

Query: 390 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLL 449
           R++L   S+TIRLP +      ++ EA+K    E   HP  EE+A+  G+++ RL  +L 
Sbjct: 382 RRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIAKRVGITVDRLEMLLF 441

Query: 450 TPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVI 509
           + + P S+E+ +  + +    E+ AD   E     + KQ M+  +  +L  L P+E++V+
Sbjct: 442 STRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQLMRSHVRNLLGILPPKERKVL 501

Query: 510 RWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 545
           R RFG++DG  K+L EIG++LGV +ER+RQ+ES A 
Sbjct: 502 RLRFGIEDGYEKSLTEIGKVLGVCKERVRQLESQAL 537


>Medtr1g007370.1 | RNA polymerase sigma factor | HC |
           chr1:310765-306478 | 20130731
          Length = 549

 Score =  200 bits (508), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 183/276 (66%), Gaps = 7/276 (2%)

Query: 271 EIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKEKMI 330
           E+E+S+G++ L +LEK++  + E      + + WA  +GVD+K L+++L +G +C++++I
Sbjct: 262 EVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCRDELI 321

Query: 331 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 390
           +S   LV+  A+ Y+G G+ L+DL+Q G  G+++GAE+FD++KG++FSTY  +WI++++ 
Sbjct: 322 RSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRKSMS 381

Query: 391 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLT 450
           + ++  +R I +P+ M +A  ++++ARK L +   ++P+D E+A+ TGLS+ ++ +    
Sbjct: 382 RMVAKYARGITVPWSMNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMS---- 437

Query: 451 PKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIR 510
             A   L     + + ++    + D   E+ EE ++KQ +KKD+  +L SL+ RE+Q+I 
Sbjct: 438 --ASHCLRTVSSMYRGIEYMGHMPDLSIESPEETVMKQHIKKDIHDILQSLDSRERQIII 495

Query: 511 WRFGM-DDGRMKTLQEIGEMLGVSRERIRQIESCAF 545
            RFG+ DD + K+L+ IG++  VS+E IR+IE  A 
Sbjct: 496 LRFGLNDDHQPKSLEYIGKIFKVSKEWIRKIEKKAL 531


>Medtr3g033420.1 | RNA polymerase sigma factor | HC |
           chr3:10685299-10683200 | 20130731
          Length = 403

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/276 (34%), Positives = 156/276 (56%), Gaps = 5/276 (1%)

Query: 270 EEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKEKM 329
           +E EL   +++  K+E  ++ + E+ G+            VD+  +  R +     KE++
Sbjct: 116 DEAELCLCLKEGAKIEVAKQRMTEQEGNSAISRFTLENTSVDKVLINTRKS-----KERL 170

Query: 330 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 389
            +    LV SIA +YQG G+++QDL+QEG  GL+ GAEKFD ++G K STY +WWIKQ +
Sbjct: 171 ARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKFDPNRGCKLSTYVYWWIKQGI 230

Query: 390 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLL 449
            K+L+ +SR IRLP        ++ EA   L     R P   E+AE   +++  +  V  
Sbjct: 231 IKALAKKSRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSE 290

Query: 450 TPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVI 509
             + P SL++ I    NL   E+I  P     E+ + +Q MK+ + K+L++L+ RE++++
Sbjct: 291 RSRQPISLDRSITDQSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIV 350

Query: 510 RWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 545
           R  FG++     + +EIG++L +SRERIRQI   A 
Sbjct: 351 RLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIAL 386


>Medtr0172s0030.1 | RNA polymerase sigma factor | HC |
           scaffold0172:25315-21123 | 20130731
          Length = 504

 Score =  159 bits (401), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 166/282 (58%), Gaps = 8/282 (2%)

Query: 270 EEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKEKM 329
           E ++LSE I+  + L++ +  L E+ G +P+  Q A    + +  LR ++      +EK+
Sbjct: 206 EVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISRADLRAKIIECSLAREKL 265

Query: 330 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 389
             SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGFK STY +WWI+Q V
Sbjct: 266 TMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGV 325

Query: 390 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLL 449
            ++L + SRT+RLP H+ E    ++ A  +L  E G  P  + +A++  +S +++     
Sbjct: 326 SRALVENSRTLRLPAHLHERLSLIRNAEYKL-EERGITPTIDRIAKSLNMSQRKVRNATE 384

Query: 450 TPKAPRSLEQKIGINQNLKPSEV----IADPEAETAEEQLIKQF-MKKDLEKVLD-SLNP 503
                 SL+++   + N  P +     IAD + E     ++ ++ +K+++ ++++ +L  
Sbjct: 385 ATSKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNVVDEWALKEEVNRLINLTLVE 444

Query: 504 REKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 545
           RE+++IR  +G+D   + T ++I + +G+SRER+RQ+   A 
Sbjct: 445 REREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVAL 485


>Medtr0172s0030.2 | RNA polymerase sigma factor | HC |
           scaffold0172:25892-20750 | 20130731
          Length = 504

 Score =  159 bits (401), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 166/282 (58%), Gaps = 8/282 (2%)

Query: 270 EEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKEKM 329
           E ++LSE I+  + L++ +  L E+ G +P+  Q A    + +  LR ++      +EK+
Sbjct: 206 EVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISRADLRAKIIECSLAREKL 265

Query: 330 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 389
             SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGFK STY +WWI+Q V
Sbjct: 266 TMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGV 325

Query: 390 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLL 449
            ++L + SRT+RLP H+ E    ++ A  +L  E G  P  + +A++  +S +++     
Sbjct: 326 SRALVENSRTLRLPAHLHERLSLIRNAEYKL-EERGITPTIDRIAKSLNMSQRKVRNATE 384

Query: 450 TPKAPRSLEQKIGINQNLKPSEV----IADPEAETAEEQLIKQF-MKKDLEKVLD-SLNP 503
                 SL+++   + N  P +     IAD + E     ++ ++ +K+++ ++++ +L  
Sbjct: 385 ATSKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNVVDEWALKEEVNRLINLTLVE 444

Query: 504 REKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 545
           RE+++IR  +G+D   + T ++I + +G+SRER+RQ+   A 
Sbjct: 445 REREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVAL 485


>Medtr1g007370.2 | RNA polymerase sigma factor | HC |
           chr1:310765-306479 | 20130731
          Length = 400

 Score =  122 bits (306), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 96/133 (72%)

Query: 271 EIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKEKMI 330
           E+E+S+G++ L +LEK++  + E      + + WA  +GVD+K L+++L +G +C++++I
Sbjct: 262 EVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCRDELI 321

Query: 331 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 390
           +S   LV+  A+ Y+G G+ L+DL+Q G  G+++GAE+FD++KG++FSTY  +WI++++ 
Sbjct: 322 RSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRKSMS 381

Query: 391 KSLSDQSRTIRLP 403
           + ++  +R I +P
Sbjct: 382 RMVAKYARGITVP 394


>Medtr3g090900.1 | RNA polymerase sigma factor | HC |
           chr3:41274049-41279255 | 20130731
          Length = 514

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 178/385 (46%), Gaps = 33/385 (8%)

Query: 201 NSITARSSRQTERKAKRVRATEKATTNIVSFKSGSTS------RKKRVP---VQEVD--- 248
           +S + R  R  + KAKR+   E+     ++ K+   S      RKKR P   V+++D   
Sbjct: 140 DSNSDRVVRNQKTKAKRMNLDER-----IALKTSENSEDVIPTRKKRNPRSRVEKIDELL 194

Query: 249 --YSDPXXXXX---XXXXXXXXXXXXEEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQ 303
             YS P                    E   L + +Q +  L ++++DL ++   +PT  +
Sbjct: 195 REYSVPADLVSLDWKKMKIPPVLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDE 254

Query: 304 WAAVAGVDQKTLRKRLNYGIFCKEKMIKSNIRLVISIAKNYQGAGMN---LQDLVQEGCR 360
            A    +    ++K +  G   + K+IK N+RLV+ +   Y     N    QDL Q G +
Sbjct: 255 IADATNMHTTQVKKAIEVGRAARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVK 314

Query: 361 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 420
           GL+   ++F+ ++ F+ STY+ +WI+ A+ +S++  S + R+PF +      ++ A+ +L
Sbjct: 315 GLITSIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLASFS-RVPFGLESVRAEIRRAKIEL 373

Query: 421 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAET 480
             +  R P +EE+ E   +S +R   V+   K   SL  +    Q     E I     + 
Sbjct: 374 SFQLQRSPTEEEIIEKVHVSPERYRDVMKASKPLLSLHSRHLTTQ----EEFINGVVDDG 429

Query: 481 AEEQLIKQ---FMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERI 537
             +   ++    ++  L+ VLDSL P+E  VIR RFG+D    +TL EI   L +SRE +
Sbjct: 430 GVDGDNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMV 489

Query: 538 RQIESCAFXXXXXXXXXXXXXXYLV 562
           R+ E  A               Y+V
Sbjct: 490 RKHEVKALMKLKHSARLDYLRRYVV 514


>Medtr3g090900.2 | RNA polymerase sigma factor | HC |
           chr3:41274049-41279255 | 20130731
          Length = 459

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 133/280 (47%), Gaps = 26/280 (9%)

Query: 201 NSITARSSRQTERKAKRVRATEKATTNIVSFKSGSTS------RKKRVP---VQEVD--- 248
           +S + R  R  + KAKR+   E+     ++ K+   S      RKKR P   V+++D   
Sbjct: 140 DSNSDRVVRNQKTKAKRMNLDER-----IALKTSENSEDVIPTRKKRNPRSRVEKIDELL 194

Query: 249 --YSDPXXXXX---XXXXXXXXXXXXEEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQ 303
             YS P                    E   L + +Q +  L ++++DL ++   +PT  +
Sbjct: 195 REYSVPADLVSLDWKKMKIPPVLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDE 254

Query: 304 WAAVAGVDQKTLRKRLNYGIFCKEKMIKSNIRLVISIAKNYQGAGMN---LQDLVQEGCR 360
            A    +    ++K +  G   + K+IK N+RLV+ +   Y     N    QDL Q G +
Sbjct: 255 IADATNMHTTQVKKAIEVGRAARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVK 314

Query: 361 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 420
           GL+   ++F+ ++ F+ STY+ +WI+ A+ +S++  S + R+PF +      ++ A+ +L
Sbjct: 315 GLITSIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLASFS-RVPFGLESVRAEIRRAKIEL 373

Query: 421 YSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQK 460
             +  R P +EE+ E   +S +R   V+   K   SL  +
Sbjct: 374 SFQLQRSPTEEEIIEKVHVSPERYRDVMKASKPLLSLHSR 413


>Medtr3g090900.3 | RNA polymerase sigma factor | HC |
           chr3:41274049-41279196 | 20130731
          Length = 403

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 26/226 (11%)

Query: 201 NSITARSSRQTERKAKRVRATEKATTNIVSFKSGSTS------RKKRVP---VQEVD--- 248
           +S + R  R  + KAKR+   E+     ++ K+   S      RKKR P   V+++D   
Sbjct: 140 DSNSDRVVRNQKTKAKRMNLDER-----IALKTSENSEDVIPTRKKRNPRSRVEKIDELL 194

Query: 249 --YSDPXXXXX---XXXXXXXXXXXXEEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQ 303
             YS P                    E   L + +Q +  L ++++DL ++   +PT  +
Sbjct: 195 REYSVPADLVSLDWKKMKIPPVLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDE 254

Query: 304 WAAVAGVDQKTLRKRLNYGIFCKEKMIKSNIRLVISIAKNYQGAGMN---LQDLVQEGCR 360
            A    +    ++K +  G   + K+IK N+RLV+ +   Y     N    QDL Q G +
Sbjct: 255 IADATNMHTTQVKKAIEVGRAARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVK 314

Query: 361 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 406
           GL+   ++F+ ++ F+ STY+ +WI+ A+ +S++  S + R+PF +
Sbjct: 315 GLITSIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLASFS-RVPFGL 359


>Medtr3g033150.1 | RNA polymerase sigma factor | HC |
           chr3:10539070-10538516 | 20130731
          Length = 154

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 68/118 (57%)

Query: 428 PDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIK 487
           P   E+AE   +++  +  V    + P SL++ I    NL   E+I  P     E+ + +
Sbjct: 20  PTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLILKEIIPGPVEMIPEKMVER 79

Query: 488 QFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 545
           Q MK+ + K+L++L+ RE++++R  FG++     + +EIG++L +SRERIRQI   A 
Sbjct: 80  QLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIAL 137