Miyakogusa Predicted Gene

Lj1g3v3330170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3330170.1 Non Characterized Hit- tr|I3S6J8|I3S6J8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,RIBOSOMAL_S3,Ribosomal protein S3, conserved site;
Ribosomal_S3_C,Ribosomal protein S3, C-terminal; ,CUFF.30468.1
         (214 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g044660.1 | 40S ribosomal S3-like protein | HC | chr1:1686...   431   e-121
Medtr1g023000.1 | 40S ribosomal S3-like protein | HC | chr1:7280...   429   e-121
Medtr6g052220.1 | 40S ribosomal S3-like protein | HC | chr6:1822...   425   e-119
Medtr6g052140.1 | 40S ribosomal S3-like protein | HC | chr6:1817...   425   e-119
Medtr1g111450.1 | 40S ribosomal S3-like protein | HC | chr1:5035...   395   e-110

>Medtr1g044660.1 | 40S ribosomal S3-like protein | HC |
           chr1:16863157-16866229 | 20130731
          Length = 239

 Score =  431 bits (1108), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/214 (98%), Positives = 213/214 (99%)

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVKTEIIIRATRTQAVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP++TEIIIRATRTQAVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60

Query: 61  EKGRRIRELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVV KRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPK 214
           VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIH+PK
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPK 214


>Medtr1g023000.1 | 40S ribosomal S3-like protein | HC |
           chr1:7280350-7278985 | 20130731
          Length = 239

 Score =  429 bits (1104), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/214 (97%), Positives = 213/214 (99%)

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVKTEIIIRATRTQAVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP++TEIIIRATRTQAVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60

Query: 61  EKGRRIRELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVV KRFKFPENSVELYAEKVNNRGLCAIAQAESLRYK+LGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKVLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPK 214
           VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIH+PK
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPK 214


>Medtr6g052220.1 | 40S ribosomal S3-like protein | HC |
           chr6:18224802-18225776 | 20130731
          Length = 235

 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/214 (96%), Positives = 211/214 (98%)

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVKTEIIIRATRTQAVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGY+GVEVRVTP++TEIIIRATRTQAVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYAGVEVRVTPMRTEIIIRATRTQAVLG 60

Query: 61  EKGRRIRELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVV KRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFK  YMISSGQPVKDY+DSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKQNYMISSGQPVKDYVDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPK 214
           VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIH+PK
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPK 214


>Medtr6g052140.1 | 40S ribosomal S3-like protein | HC |
           chr6:18174999-18174025 | 20130731
          Length = 235

 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/214 (96%), Positives = 211/214 (98%)

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVKTEIIIRATRTQAVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGY+GVEVRVTP++TEIIIRATRTQAVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYAGVEVRVTPMRTEIIIRATRTQAVLG 60

Query: 61  EKGRRIRELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVV KRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFK  YMISSGQPVKDY+DSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKQNYMISSGQPVKDYVDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPK 214
           VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIH+PK
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPK 214


>Medtr1g111450.1 | 40S ribosomal S3-like protein | HC |
           chr1:50357851-50355664 | 20130731
          Length = 237

 Score =  395 bits (1015), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/214 (88%), Positives = 204/214 (95%)

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVKTEIIIRATRTQAVLG 60
           MATQMSKKRK VADGV  AE++E L+R LAEDGYSGVE+RVTP++TEIII+ATRTQAVLG
Sbjct: 1   MATQMSKKRKVVADGVLNAEMHEFLSRVLAEDGYSGVEIRVTPIRTEIIIKATRTQAVLG 60

Query: 61  EKGRRIRELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELT+++ KRF FPENSV+LYAEKV+NRGLCA AQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTTLIHKRFNFPENSVQLYAEKVSNRGLCAAAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFK G M+SSGQPVKDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKHGDMLSSGQPVKDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPK 214
           VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIH+PK
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPK 214