Miyakogusa Predicted Gene
- Lj1g3v3329510.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3329510.1 tr|D7KE87|D7KE87_ARALL High mobility group family
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARA,58.26,2e-17,seg,NULL; HMG_box,High mobility group, superfamily;
HMG-box,High mobility group, superfamily; no des,CUFF.30397.1
(118 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g116180.2 | transcription factor | HC | chr1:52519467-5251... 132 7e-32
Medtr1g116180.1 | transcription factor | HC | chr1:52519486-5251... 126 4e-30
Medtr7g005970.1 | high mobility group B-like protein | LC | chr7... 117 3e-27
Medtr3g114920.1 | high mobility group B-like protein | HC | chr3... 72 1e-13
>Medtr1g116180.2 | transcription factor | HC |
chr1:52519467-52514170 | 20130731
Length = 333
Score = 132 bits (332), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 76/108 (70%), Gaps = 3/108 (2%)
Query: 2 VKGVLYESPQTPMLPASASHHQSIIAKNNNTPAVLGVQXXXXXXXXXXXXXDPAHPKPNR 61
+KGVLY++PQ P+LPAS H S+ A NNN A +GV DPAHPKPNR
Sbjct: 212 LKGVLYQAPQNPVLPAS---HHSVPANNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNR 268
Query: 62 SGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSVSNLLN 109
SGYNFFFAEQH RLK L++ KDR+ISR IGELWNKL E E++V NL N
Sbjct: 269 SGYNFFFAEQHPRLKPLHRGKDREISRTIGELWNKLPESEKAVRNLFN 316
>Medtr1g116180.1 | transcription factor | HC |
chr1:52519486-52514092 | 20130731
Length = 415
Score = 126 bits (317), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 73/103 (70%), Gaps = 3/103 (2%)
Query: 2 VKGVLYESPQTPMLPASASHHQSIIAKNNNTPAVLGVQXXXXXXXXXXXXXDPAHPKPNR 61
+KGVLY++PQ P+LPAS H S+ A NNN A +GV DPAHPKPNR
Sbjct: 212 LKGVLYQAPQNPVLPAS---HHSVPANNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNR 268
Query: 62 SGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSV 104
SGYNFFFAEQH RLK L++ KDR+ISR IGELWNKL E E++V
Sbjct: 269 SGYNFFFAEQHPRLKPLHRGKDREISRTIGELWNKLPESEKAV 311
>Medtr7g005970.1 | high mobility group B-like protein | LC |
chr7:435478-439265 | 20130731
Length = 437
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 68/105 (64%), Gaps = 14/105 (13%)
Query: 2 VKGVLYESPQTPMLPASASHHQSIIAKNNN-TPAVLGVQXXXXXXXXXXXXX-DPAHPKP 59
+KGVLYESPQ SI NNN A LGVQ DPAHPKP
Sbjct: 211 LKGVLYESPQ------------SIKINNNNIASAALGVQRRRRRRKKSEIKRRDPAHPKP 258
Query: 60 NRSGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSV 104
NRSGYNFFFAEQHARLKLLNQ D+DISRMIGELWN LKE E++V
Sbjct: 259 NRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTV 303
>Medtr3g114920.1 | high mobility group B-like protein | HC |
chr3:53678262-53676021 | 20130731
Length = 327
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 1 MVKGVLYESPQTPMLPASASHHQSIIAKNNNTPAVLGVQXXXXXXXXXXXXXDPAHPKPN 60
++KGVLY + + + H I N+ LG + DP +PKPN
Sbjct: 196 VLKGVLYHQEKVVSPSSLVTQHNGAIEPFNHQTHRLGRRKRRKRKW------DPNYPKPN 249
Query: 61 RSGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSVSNLLNL 110
RSGYNFFFAE+H +LK L ++R+ ++MIG+ WN L ER + + L
Sbjct: 250 RSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSPEERMIYQNIGL 299