Miyakogusa Predicted Gene

Lj1g3v3329000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3329000.1 Non Characterized Hit- tr|Q2JNV7|Q2JNV7_SYNJB
Putative membrane protein OS=Synechococcus sp.
(strain,32.54,1e-16,UNCHARACTERIZED,NULL; SNARE_assoc,SNARE associated
Golgi protein; seg,NULL,CUFF.30361.1
         (238 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g006790.1 | SNARE associated family protein | HC | chr7:12...   340   9e-94
Medtr7g006800.1 | SNARE associated family protein | HC | chr7:88...   340   9e-94
Medtr4g032670.1 | SNARE associated family protein | HC | chr4:11...    52   5e-07

>Medtr7g006790.1 | SNARE associated family protein | HC |
           chr7:1243970-1238750 | 20130731
          Length = 251

 Score =  340 bits (871), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 173/246 (70%), Positives = 196/246 (79%), Gaps = 8/246 (3%)

Query: 1   MGRWWLKXXXXXXXXXXLWRTWNSNG---SWDKEAALKWMSEWSERLGVWAIPLFISLHT 57
           M  WW K          L R++        +DKE+ +KWM + S++LGVWAIPL+I++HT
Sbjct: 1   MAGWWWKTAVLIAISALLLRSYGGEAIGIGFDKESFMKWMRDLSDKLGVWAIPLYIAIHT 60

Query: 58  LSIALCLPSAIFLETGASILFGFFPSVLCVFSAKILAASLSFWIGRLVFRNSTSAMDWAR 117
           +SIALCLPSAIFLET AS+LFG+F SVLCVFSAKILAASLSF IGRLVFRNSTSAMDWAR
Sbjct: 61  ISIALCLPSAIFLETAASLLFGWFASVLCVFSAKILAASLSFSIGRLVFRNSTSAMDWAR 120

Query: 118 RNKYFILLSKGVERDGWKFVLLARFSPVPSYIINYTLAATEVGFVLDFLLPTIIGCVPMI 177
           RNKYF +L+ GVERDGWKFVLLARFSPVPSYIINYTLAATEV F LDFLLPTI+GC+PMI
Sbjct: 121 RNKYFKILANGVERDGWKFVLLARFSPVPSYIINYTLAATEVRFFLDFLLPTIVGCIPMI 180

Query: 178 LQNTSIGSLAGAAYATASGSKKSQIWSYVFPMVGXXXXXXXXXRIKKYSTQVSL-----D 232
           LQNTSIGSLAGAA ATASGSKKSQ WSY FP+VG         RIKKYS+Q+S+     D
Sbjct: 181 LQNTSIGSLAGAAVATASGSKKSQFWSYFFPIVGILSSVLISLRIKKYSSQISVPEISSD 240

Query: 233 KSNTVD 238
           K NTV+
Sbjct: 241 KDNTVE 246


>Medtr7g006800.1 | SNARE associated family protein | HC |
           chr7:884601-877697 | 20130731
          Length = 251

 Score =  340 bits (871), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 173/246 (70%), Positives = 196/246 (79%), Gaps = 8/246 (3%)

Query: 1   MGRWWLKXXXXXXXXXXLWRTWNSNG---SWDKEAALKWMSEWSERLGVWAIPLFISLHT 57
           M  WW K          L R++        +DKE+ +KWM + S++LGVWAIPL+I++HT
Sbjct: 1   MAGWWWKTAVLIAISALLLRSYGGEAIGIGFDKESFMKWMRDLSDKLGVWAIPLYIAIHT 60

Query: 58  LSIALCLPSAIFLETGASILFGFFPSVLCVFSAKILAASLSFWIGRLVFRNSTSAMDWAR 117
           +SIALCLPSAIFLET AS+LFG+F SVLCVFSAKILAASLSF IGRLVFRNSTSAMDWAR
Sbjct: 61  ISIALCLPSAIFLETAASLLFGWFASVLCVFSAKILAASLSFSIGRLVFRNSTSAMDWAR 120

Query: 118 RNKYFILLSKGVERDGWKFVLLARFSPVPSYIINYTLAATEVGFVLDFLLPTIIGCVPMI 177
           RNKYF +L+ GVERDGWKFVLLARFSPVPSYIINYTLAATEV F LDFLLPTI+GC+PMI
Sbjct: 121 RNKYFKILANGVERDGWKFVLLARFSPVPSYIINYTLAATEVRFFLDFLLPTIVGCIPMI 180

Query: 178 LQNTSIGSLAGAAYATASGSKKSQIWSYVFPMVGXXXXXXXXXRIKKYSTQVSL-----D 232
           LQNTSIGSLAGAA ATASGSKKSQ WSY FP+VG         RIKKYS+Q+S+     D
Sbjct: 181 LQNTSIGSLAGAAVATASGSKKSQFWSYFFPIVGILSSVLISLRIKKYSSQISVPEISSD 240

Query: 233 KSNTVD 238
           K NTV+
Sbjct: 241 KDNTVE 246


>Medtr4g032670.1 | SNARE associated family protein | HC |
           chr4:11261721-11269691 | 20130731
          Length = 331

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 34  LKWMSEWSERLGVWAIPLFISLHTLSIALCLPSAIFLETGASILFGFFPSVLCVFSAKIL 93
           L   S + E  G     LF++++     L +P AI L   A +LFG     + V  +  +
Sbjct: 132 LNQFSGFIEGYGSAGYALFVAVYAGLEILAIP-AIPLTMSAGLLFGSLTGTIIVSISGTV 190

Query: 94  AASLSFWIGRLVFRNSTSAMDWARRNKYFILLSKGVERDGWKFVLLARFSP-VPSYIINY 152
           AAS++F I R   R     +     NK F+ + K +  +G+K V L R SP +P  + NY
Sbjct: 191 AASVAFLIARYFARERI--LKLVEGNKKFLAIDKAIGENGFKVVTLLRLSPLLPFSLGNY 248

Query: 153 TLAATEVGFVLDFLLPTIIGCVP 175
               T V F L ++L + +G +P
Sbjct: 249 LYGLTSVKF-LPYVLGSWLGMLP 270