Miyakogusa Predicted Gene

Lj1g3v3328730.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3328730.1 tr|D7DVX0|D7DVX0_NOSA0 Probable 30S ribosomal
protein PSRP-3 OS=Nostoc azollae (strain 0708)
GN=Aazo,53.16,2e-19,PSRP-3_Ycf65,Ribosomal protein PSRP-3/Ycf65;
RRP3_SPIOL_P82412;,Ribosomal protein PSRP-3/Ycf65; seg,,CUFF.30431.1
         (175 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g090520.1 | plastid-specific 30S ribosomal protein, putati...   193   8e-50

>Medtr6g090520.1 | plastid-specific 30S ribosomal protein, putative
           | HC | chr6:34063921-34062230 | 20130731
          Length = 161

 Score =  193 bits (490), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 95/101 (94%), Positives = 96/101 (95%), Gaps = 2/101 (1%)

Query: 77  LSPPPQ--KLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFWPRKDA 134
           L PPPQ  KLGVVVKPTDKPRLVLKFIWMEKNIGI LDQ +PGHGTIPLSPYYFWPRKDA
Sbjct: 60  LQPPPQSQKLGVVVKPTDKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDA 119

Query: 135 WEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLS 175
           WEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLS
Sbjct: 120 WEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLS 160