Miyakogusa Predicted Gene

Lj1g3v3328720.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3328720.1 tr|I0J3L1|I0J3L1_9EUGL Probable 30S ribosomal
protein PSRP-3 OS=Eutreptiella gymnastica GN=ycf65
PE=,56.58,2e-19,PSRP-3_Ycf65,Ribosomal protein PSRP-3/Ycf65;
RRP3_SPIOL_P82412;,Ribosomal protein PSRP-3/Ycf65,CUFF.30430.1
         (99 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g090520.1 | plastid-specific 30S ribosomal protein, putati...   189   5e-49

>Medtr6g090520.1 | plastid-specific 30S ribosomal protein, putative
           | HC | chr6:34063921-34062230 | 20130731
          Length = 161

 Score =  189 bits (480), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/94 (96%), Positives = 92/94 (97%)

Query: 6   QKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFWPRKDAWEELKEL 65
           QKLGVVVKPTDKPRLVLKFIWMEKNIGI LDQ +PGHGTIPLSPYYFWPRKDAWEELKEL
Sbjct: 67  QKLGVVVKPTDKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKEL 126

Query: 66  LESKPWISQKQMIILLNQATDIINLWQQSGGNLS 99
           LESKPWISQKQMIILLNQATDIINLWQQSGGNLS
Sbjct: 127 LESKPWISQKQMIILLNQATDIINLWQQSGGNLS 160