Miyakogusa Predicted Gene

Lj1g3v3328690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3328690.1 Non Characterized Hit- tr|I1KZL0|I1KZL0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,66.27,4e-19,
,CUFF.30422.1
         (106 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g407010.1 | regulator of Vps4 activity in the MVB pathway ...    77   4e-15
Medtr1g111210.1 | regulator of Vps4 activity in the MVB pathway ...    49   1e-06

>Medtr7g407010.1 | regulator of Vps4 activity in the MVB pathway
          protein | HC | chr7:1041779-1039059 | 20130731
          Length = 440

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 47/58 (81%)

Query: 1  MGLLGKSFTSKFRSITTLAISRIAILMNQHKARASHARSDVAQFLNLGYQDRALLRVK 58
          MGL+GKSFTSK +++T+LAISRIAIL N  KAR S+A  DV+Q L L Y D+AL+RV+
Sbjct: 1  MGLIGKSFTSKLKNLTSLAISRIAILKNHRKARDSYAYFDVSQLLKLDYHDQALVRVE 58


>Medtr1g111210.1 | regulator of Vps4 activity in the MVB pathway
          protein | HC | chr1:50228743-50230793 | 20130731
          Length = 373

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 2  GLLGKSF-TSKFRSITTLAISRIAILMNQHKARASHARSDVAQFLNL-GYQDRALLRVK 58
           LLG++F   KF+    LAISR+A+L NQ   R   +RSDV Q L L     RALLRV+
Sbjct: 7  ALLGRNFKADKFKPTINLAISRLAVLKNQRNVRLRQSRSDVLQLLQLPDNHQRALLRVE 65