Miyakogusa Predicted Gene

Lj1g3v3328650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3328650.1 Non Characterized Hit- tr|I3SBD5|I3SBD5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.67,0,Ubiquitin
homologues,Ubiquitin; Ubiquitin associated
domain,Ubiquitin-associated/translation elongat,CUFF.30344.1
         (376 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g407040.1 | RAD23 UV excision repair family protein | HC |...   510   e-145
Medtr2g105410.1 | DNA repair protein RAD23-1, putative | HC | ch...   355   4e-98
Medtr1g111090.1 | RAD23 UV excision repair family protein | HC |...   347   8e-96
Medtr7g006500.1 | UBA/Ts-N domain protein | LC | chr7:719216-720...    70   5e-12
Medtr7g037380.1 | ubiquitin-like protein | HC | chr7:13778886-13...    68   1e-11
Medtr8g073920.1 | ubiquitin 1, related protein | HC | chr8:31260...    51   2e-06

>Medtr7g407040.1 | RAD23 UV excision repair family protein | HC |
           chr7:1064684-1059097 | 20130731
          Length = 370

 Score =  510 bits (1314), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/380 (71%), Positives = 289/380 (76%), Gaps = 14/380 (3%)

Query: 1   MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
           MKINVKTLKGTHF+IQVNL D+V DVKK IE AQGA VYPAAQQMLIHQGKVLKD+TTLE
Sbjct: 1   MKINVKTLKGTHFEIQVNLHDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLE 60

Query: 61  ENNVAEDSFVVIMLSKNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ 120
           EN VAE+SF+VIMLSKNKV                                       GQ
Sbjct: 61  ENQVAENSFIVIMLSKNKVSSSGASAASAAPPAVQPASSLPPPLSTPQPLASTV----GQ 116

Query: 121 GASNSEQSPVITPPTAAVSSVYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDTVIRALR 180
           G SN  Q                   SNLIAGS ++PT+QQILEMGGGSWDRDTVIRALR
Sbjct: 117 GESNPAQG------PVVTPPTTVVPESNLIAGSTLEPTIQQILEMGGGSWDRDTVIRALR 170

Query: 181 AAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVQPP-QPAVPTGGPNTNPLNL 239
           AAYNNPERAVEYLYSGIPEQA+ PAVA S +VGQAENPS Q P Q AVP  GPNTNPLNL
Sbjct: 171 AAYNNPERAVEYLYSGIPEQAEAPAVAASTNVGQAENPSAQAPAQLAVPAVGPNTNPLNL 230

Query: 240 FPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQE 299
           FPQGIPN+GA +NAGDL+FLRN+QQFQALR MVQANPQILQPMLQELGKQNP+LM+LIQE
Sbjct: 231 FPQGIPNLGANENAGDLEFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPNLMELIQE 290

Query: 300 HQSDFLNLINEPEGEEN---PLAAGMTQAITVTPEENEAIQRLEDMGFDRDLVLEVFIAC 356
           HQ+DFL LINEP GEEN    L A   Q IT+TPEENEAIQRLEDMGFDRDLVLEVF AC
Sbjct: 291 HQADFLRLINEPGGEENLEGQLGALAPQTITITPEENEAIQRLEDMGFDRDLVLEVFFAC 350

Query: 357 NRNEDLAANYLLDHQNEFDD 376
           N+NEDLAANYLLDHQNEFDD
Sbjct: 351 NKNEDLAANYLLDHQNEFDD 370


>Medtr2g105410.1 | DNA repair protein RAD23-1, putative | HC |
           chr2:45450877-45445798 | 20130731
          Length = 366

 Score =  355 bits (911), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 201/381 (52%), Positives = 248/381 (65%), Gaps = 20/381 (5%)

Query: 1   MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
           MK+ VKTLKG+HF+I+V+  DS+  VKK IE  QG   YP  QQ+LIH GKVLKD+TTL 
Sbjct: 1   MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60

Query: 61  ENNVAEDSFVVIMLSKNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ 120
           +N V+ED F+V+MLSK+KV                                         
Sbjct: 61  DNKVSEDGFLVVMLSKSKVLGSAGTSSTQTASNPPITVPTPDSTSVVQTQ---------- 110

Query: 121 GASNSEQSPVITPPTAAVSSVYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDTVIRALR 180
            ++N+  SP +  PT   +  YGQAASNL+AGSN++ T+QQ+++MGGGSWDRDTV RALR
Sbjct: 111 -SANNNASPAVLAPTNVTTDTYGQAASNLVAGSNLEQTIQQLIDMGGGSWDRDTVNRALR 169

Query: 181 AAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVQPPQPAVPTGGPNTNPLNLF 240
           AA+NNPERAV+YLYSGIPE A+V   A        E   V      V  G PN++PLN+F
Sbjct: 170 AAFNNPERAVDYLYSGIPEAAEVAVPAAQYPSNPTETGGV---TTGVVPGVPNSSPLNMF 226

Query: 241 PQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEH 300
           PQ   + GA   AG LDFLRNN QFQALR MVQ+NPQILQP+LQELGKQNP L++LI EH
Sbjct: 227 PQETIS-GAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIDEH 285

Query: 301 QSDFLNLINEP----EGEENPLAA-GMTQAITVTPEENEAIQRLEDMGFDRDLVLEVFIA 355
            S+FL LINEP    EG+    A   M  A+ VTP E EAI RLE MGFDR  V+E F+A
Sbjct: 286 HSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLA 345

Query: 356 CNRNEDLAANYLLDHQNEFDD 376
           C+R+E LAANYLL++  +F+D
Sbjct: 346 CDRDEQLAANYLLENAGDFED 366


>Medtr1g111090.1 | RAD23 UV excision repair family protein | HC |
           chr1:50171474-50175986 | 20130731
          Length = 397

 Score =  347 bits (891), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 178/251 (70%), Positives = 203/251 (80%), Gaps = 13/251 (5%)

Query: 139 SSVYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIP 198
           S VYGQAASNL+AGSN++ TVQQIL+MGGGSWDRDTVIRALRAA+NNPERAVEYLYSGIP
Sbjct: 146 SDVYGQAASNLVAGSNLEGTVQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIP 205

Query: 199 EQADVPAVARSPSVGQAENP------SVQPPQPAVPTGGPNTNPLNLFPQGIPNM-GAED 251
           EQA+ PAVAR P+  Q  NP              V + GPN NPL+LFPQG+PN+     
Sbjct: 206 EQAEAPAVARVPASAQPVNPEAAAAAPQAAQPAPVTSSGPNANPLDLFPQGLPNIGAGAA 265

Query: 252 NAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP 311
            AG LDFLRN+QQFQALRAMVQANPQILQPMLQELGKQNPHLM+LI++HQ+DFL LINEP
Sbjct: 266 GAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEP 325

Query: 312 E--GEENPL----AAGMTQAITVTPEENEAIQRLEDMGFDRDLVLEVFIACNRNEDLAAN 365
              GE N L    AAGM Q++TVTPEE +AI+RLE MGFDR +VLEVF ACN+NE+LAAN
Sbjct: 326 MEGGEGNNLLGQMAAGMPQSVTVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAAN 385

Query: 366 YLLDHQNEFDD 376
           YLLDH +EFD+
Sbjct: 386 YLLDHMHEFDE 396



 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 67/78 (85%)

Query: 1  MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
          MK+ VKTLKGTHF+I+V  QD+++ VKK IE  QG  VYPAAQQMLIHQGKVLKD TTLE
Sbjct: 1  MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLE 60

Query: 61 ENNVAEDSFVVIMLSKNK 78
          EN VAE+SF+VIMLSK+K
Sbjct: 61 ENKVAENSFIVIMLSKSK 78


>Medtr7g006500.1 | UBA/Ts-N domain protein | LC | chr7:719216-720461
           | 20130731
          Length = 142

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 40/53 (75%), Gaps = 2/53 (3%)

Query: 142 YGQAASNLIAGSNVDPTVQQILEMGGGSWDRDTVIRALRAAYNNPERAVEYLY 194
           YG+A SNLIAGS ++PT+QQI    G    RD VIRAL AAYNNPER VEYLY
Sbjct: 62  YGKAESNLIAGSTLEPTIQQI--DIGRKLVRDIVIRALSAAYNNPERTVEYLY 112


>Medtr7g037380.1 | ubiquitin-like protein | HC |
           chr7:13778886-13780272 | 20130731
          Length = 176

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query: 23  VADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLEENNVAEDSFVVIMLSK 76
           + DVK  IE  Q    YP  QQ+LIH GKVLKD+TTL +N V+ED F+V+MLSK
Sbjct: 77  IMDVKTNIEDIQEKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSK 130


>Medtr8g073920.1 | ubiquitin 1, related protein | HC |
          chr8:31260790-31254680 | 20130731
          Length = 539

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 3  INVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLEEN 62
          INV+   GT + +QV+L  +V   K  I  A+   + PA QQ LI++G++LKDD TL+  
Sbjct: 20 INVRCSNGTKYSVQVSLDSTVGSFKDLI--ARNCDI-PAQQQRLIYKGRILKDDQTLQSY 76

Query: 63 NVAEDSFVVIMLS 75
           +  D  V ++ S
Sbjct: 77 GLEADHAVHLVRS 89