Miyakogusa Predicted Gene

Lj1g3v3318580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3318580.1 Non Characterized Hit- tr|I1LVY6|I1LVY6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.35318 PE,89.03,0,no
description,NULL; Cryptochrome/photolyase FAD-binding domain,DNA
photolyase, FAD-binding/Cryptoch,
NODE_41817_length_1369_cov_269.544922.path3.1
         (309 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g063920.3 | cryptochrome protein | HC | chr5:26511516-2651...   477   e-135
Medtr5g063920.2 | cryptochrome protein | HC | chr5:26511516-2651...   477   e-135
Medtr5g063920.1 | cryptochrome protein | HC | chr5:26511516-2651...   477   e-135
Medtr5g063920.4 | cryptochrome protein | HC | chr5:26511516-2651...   477   e-135
Medtr1g043190.1 | cryptochrome 2B apoprotein | HC | chr1:1616919...   201   1e-51
Medtr1g076190.2 | cryptochrome 2B apoprotein | HC | chr1:3375693...   190   1e-48
Medtr1g076190.1 | cryptochrome 2B apoprotein | HC | chr1:3375693...   190   1e-48
Medtr4g011370.3 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...    70   2e-12
Medtr4g011370.1 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...    70   2e-12
Medtr4g011370.2 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...    62   6e-10

>Medtr5g063920.3 | cryptochrome protein | HC |
           chr5:26511516-26517722 | 20130731
          Length = 515

 Score =  477 bits (1228), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/311 (77%), Positives = 259/311 (83%), Gaps = 9/311 (2%)

Query: 1   MKYFWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPEL 60
           MKYFWDTLLDADLESDALGWQYISGT+PDGRE DRIDNPQFEGYKCDPNGEYVRRWLPEL
Sbjct: 212 MKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPEL 271

Query: 61  SRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           +RLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIV IDAA  RL+EAL+QMWQ EAASRA
Sbjct: 272 ARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEALIQMWQLEAASRA 331

Query: 121 AMENGTEEGLGDSSESAPIAFPQDMIMEEERHEPVRNNPPHGTRRYQDQMVKSITSSHVR 180
           A ENGTEEGLGDS+ES PIAFPQD+ M EERHEP+RNN PHGTRRYQDQMV S+TSS VR
Sbjct: 332 AAENGTEEGLGDSAESTPIAFPQDIQM-EERHEPIRNNAPHGTRRYQDQMVPSMTSSRVR 390

Query: 181 VEEEENASDLRNSAQDNRAEVPMNVNTQQNAREAVNQGVLQTINRNNTQLQHN--NTVWL 238
           VEEEE +S +RNSA D+RAEVP N     NAREA+NQG LQ  NRN  Q +HN   T WL
Sbjct: 391 VEEEETSS-VRNSAGDSRAEVPTNA----NAREAMNQGALQNGNRNTRQ-RHNPTTTFWL 444

Query: 239 RNXXXXXXXXXXXXXXXXXXGGVVPVWSPPASSFSEQFVDDENGIGASSSYLQRHPQSHQ 298
           RN                  GGVVP WSP AS+FS+Q+VDDENGIGA+S YLQRHPQSHQ
Sbjct: 445 RNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQYVDDENGIGATSPYLQRHPQSHQ 504

Query: 299 MMNWTRLPQTG 309
           +M+WTRLPQTG
Sbjct: 505 LMSWTRLPQTG 515


>Medtr5g063920.2 | cryptochrome protein | HC |
           chr5:26511516-26517722 | 20130731
          Length = 679

 Score =  477 bits (1228), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/311 (77%), Positives = 259/311 (83%), Gaps = 9/311 (2%)

Query: 1   MKYFWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPEL 60
           MKYFWDTLLDADLESDALGWQYISGT+PDGRE DRIDNPQFEGYKCDPNGEYVRRWLPEL
Sbjct: 376 MKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPEL 435

Query: 61  SRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           +RLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIV IDAA  RL+EAL+QMWQ EAASRA
Sbjct: 436 ARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEALIQMWQLEAASRA 495

Query: 121 AMENGTEEGLGDSSESAPIAFPQDMIMEEERHEPVRNNPPHGTRRYQDQMVKSITSSHVR 180
           A ENGTEEGLGDS+ES PIAFPQD+ M EERHEP+RNN PHGTRRYQDQMV S+TSS VR
Sbjct: 496 AAENGTEEGLGDSAESTPIAFPQDIQM-EERHEPIRNNAPHGTRRYQDQMVPSMTSSRVR 554

Query: 181 VEEEENASDLRNSAQDNRAEVPMNVNTQQNAREAVNQGVLQTINRNNTQLQHN--NTVWL 238
           VEEEE +S +RNSA D+RAEVP N     NAREA+NQG LQ  NRN  Q +HN   T WL
Sbjct: 555 VEEEETSS-VRNSAGDSRAEVPTNA----NAREAMNQGALQNGNRNTRQ-RHNPTTTFWL 608

Query: 239 RNXXXXXXXXXXXXXXXXXXGGVVPVWSPPASSFSEQFVDDENGIGASSSYLQRHPQSHQ 298
           RN                  GGVVP WSP AS+FS+Q+VDDENGIGA+S YLQRHPQSHQ
Sbjct: 609 RNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQYVDDENGIGATSPYLQRHPQSHQ 668

Query: 299 MMNWTRLPQTG 309
           +M+WTRLPQTG
Sbjct: 669 LMSWTRLPQTG 679


>Medtr5g063920.1 | cryptochrome protein | HC |
           chr5:26511516-26517722 | 20130731
          Length = 679

 Score =  477 bits (1228), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/311 (77%), Positives = 259/311 (83%), Gaps = 9/311 (2%)

Query: 1   MKYFWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPEL 60
           MKYFWDTLLDADLESDALGWQYISGT+PDGRE DRIDNPQFEGYKCDPNGEYVRRWLPEL
Sbjct: 376 MKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPEL 435

Query: 61  SRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           +RLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIV IDAA  RL+EAL+QMWQ EAASRA
Sbjct: 436 ARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEALIQMWQLEAASRA 495

Query: 121 AMENGTEEGLGDSSESAPIAFPQDMIMEEERHEPVRNNPPHGTRRYQDQMVKSITSSHVR 180
           A ENGTEEGLGDS+ES PIAFPQD+ M EERHEP+RNN PHGTRRYQDQMV S+TSS VR
Sbjct: 496 AAENGTEEGLGDSAESTPIAFPQDIQM-EERHEPIRNNAPHGTRRYQDQMVPSMTSSRVR 554

Query: 181 VEEEENASDLRNSAQDNRAEVPMNVNTQQNAREAVNQGVLQTINRNNTQLQHN--NTVWL 238
           VEEEE +S +RNSA D+RAEVP N     NAREA+NQG LQ  NRN  Q +HN   T WL
Sbjct: 555 VEEEETSS-VRNSAGDSRAEVPTNA----NAREAMNQGALQNGNRNTRQ-RHNPTTTFWL 608

Query: 239 RNXXXXXXXXXXXXXXXXXXGGVVPVWSPPASSFSEQFVDDENGIGASSSYLQRHPQSHQ 298
           RN                  GGVVP WSP AS+FS+Q+VDDENGIGA+S YLQRHPQSHQ
Sbjct: 609 RNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQYVDDENGIGATSPYLQRHPQSHQ 668

Query: 299 MMNWTRLPQTG 309
           +M+WTRLPQTG
Sbjct: 669 LMSWTRLPQTG 679


>Medtr5g063920.4 | cryptochrome protein | HC |
           chr5:26511516-26517722 | 20130731
          Length = 679

 Score =  477 bits (1228), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/311 (77%), Positives = 259/311 (83%), Gaps = 9/311 (2%)

Query: 1   MKYFWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPEL 60
           MKYFWDTLLDADLESDALGWQYISGT+PDGRE DRIDNPQFEGYKCDPNGEYVRRWLPEL
Sbjct: 376 MKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPEL 435

Query: 61  SRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           +RLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIV IDAA  RL+EAL+QMWQ EAASRA
Sbjct: 436 ARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEALIQMWQLEAASRA 495

Query: 121 AMENGTEEGLGDSSESAPIAFPQDMIMEEERHEPVRNNPPHGTRRYQDQMVKSITSSHVR 180
           A ENGTEEGLGDS+ES PIAFPQD+ M EERHEP+RNN PHGTRRYQDQMV S+TSS VR
Sbjct: 496 AAENGTEEGLGDSAESTPIAFPQDIQM-EERHEPIRNNAPHGTRRYQDQMVPSMTSSRVR 554

Query: 181 VEEEENASDLRNSAQDNRAEVPMNVNTQQNAREAVNQGVLQTINRNNTQLQHN--NTVWL 238
           VEEEE +S +RNSA D+RAEVP N     NAREA+NQG LQ  NRN  Q +HN   T WL
Sbjct: 555 VEEEETSS-VRNSAGDSRAEVPTNA----NAREAMNQGALQNGNRNTRQ-RHNPTTTFWL 608

Query: 239 RNXXXXXXXXXXXXXXXXXXGGVVPVWSPPASSFSEQFVDDENGIGASSSYLQRHPQSHQ 298
           RN                  GGVVP WSP AS+FS+Q+VDDENGIGA+S YLQRHPQSHQ
Sbjct: 609 RNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQYVDDENGIGATSPYLQRHPQSHQ 668

Query: 299 MMNWTRLPQTG 309
           +M+WTRLPQTG
Sbjct: 669 LMSWTRLPQTG 679


>Medtr1g043190.1 | cryptochrome 2B apoprotein | HC |
           chr1:16169199-16173365 | 20130731
          Length = 600

 Score =  201 bits (510), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 90/145 (62%), Positives = 115/145 (79%), Gaps = 1/145 (0%)

Query: 1   MKYFWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPEL 60
           MKYFWDTLLDADLESD LGWQYISG++PDG EL+R+D+P+ +G K DP GEY+R+WLPEL
Sbjct: 372 MKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPEIQGTKYDPEGEYIRQWLPEL 431

Query: 61  SRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           +R+PTEWIHHPWNAP +VL+A+GIELG NYP PI+ ID A+ +L +A+ +MW+ EAAS+A
Sbjct: 432 ARIPTEWIHHPWNAPLTVLKASGIELGQNYPKPIIEIDLAREQLTQAIFKMWEDEAASKA 491

Query: 121 AMENGTEEGLGDSSE-SAPIAFPQD 144
           +      E + DS   S P  F +D
Sbjct: 492 STSENKHEVVDDSENLSIPKVFLKD 516


>Medtr1g076190.2 | cryptochrome 2B apoprotein | HC |
           chr1:33756938-33760551 | 20130731
          Length = 639

 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 85/150 (56%), Positives = 117/150 (78%), Gaps = 3/150 (2%)

Query: 1   MKYFWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPEL 60
           MKYFWDTLLDADLE D LGWQYISG +PDG EL+R+D+P+  G + DP GEYVR+WLPEL
Sbjct: 374 MKYFWDTLLDADLECDILGWQYISGGLPDGHELERLDDPEILGSRFDPEGEYVRQWLPEL 433

Query: 61  SRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           +R+PTEWIHHPWNAP SVL+A+G+ELG NYP PI+ ID A+  L +A+ +MW+ +AAS+A
Sbjct: 434 ARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDMARENLTQAIFKMWEIQAASKA 493

Query: 121 AMENGTEEGLGDSSESAPIAFPQDMIMEEE 150
           +     +E +   +ES  +  P+ ++++++
Sbjct: 494 SGSEARDEVV---AESEYLDIPKVVLLKDK 520


>Medtr1g076190.1 | cryptochrome 2B apoprotein | HC |
           chr1:33756938-33760848 | 20130731
          Length = 630

 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 85/150 (56%), Positives = 117/150 (78%), Gaps = 3/150 (2%)

Query: 1   MKYFWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPEL 60
           MKYFWDTLLDADLE D LGWQYISG +PDG EL+R+D+P+  G + DP GEYVR+WLPEL
Sbjct: 374 MKYFWDTLLDADLECDILGWQYISGGLPDGHELERLDDPEILGSRFDPEGEYVRQWLPEL 433

Query: 61  SRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           +R+PTEWIHHPWNAP SVL+A+G+ELG NYP PI+ ID A+  L +A+ +MW+ +AAS+A
Sbjct: 434 ARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDMARENLTQAIFKMWEIQAASKA 493

Query: 121 AMENGTEEGLGDSSESAPIAFPQDMIMEEE 150
           +     +E +   +ES  +  P+ ++++++
Sbjct: 494 SGSEARDEVV---AESEYLDIPKVVLLKDK 520


>Medtr4g011370.3 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 518

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 4/117 (3%)

Query: 4   FWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPELSRL 63
           F   L+D+D   +   W ++S +     + +RI +P   G K DP+G+Y+R +LP L  +
Sbjct: 370 FERLLIDSDWAINNGNWMWLSCS-SFFYQYNRIYSPTTFGKKYDPDGDYIRHFLPVLKDM 428

Query: 64  PTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           P  +I+ PW AP S+   A   +G +YP+P+V  D+A    +E   +M +  A S+A
Sbjct: 429 PKAYIYEPWTAPPSIQTKANCIIGKDYPMPVVSHDSAS---KECKRKMGEAYALSKA 482


>Medtr4g011370.1 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 542

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 4/113 (3%)

Query: 8   LLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPELSRLPTEW 67
           L+D+D   +   W ++S +     + +RI +P   G K DP+G+Y+R +LP L  +P  +
Sbjct: 398 LIDSDWAINNGNWMWLSCS-SFFYQYNRIYSPTTFGKKYDPDGDYIRHFLPVLKDMPKAY 456

Query: 68  IHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRA 120
           I+ PW AP S+   A   +G +YP+P+V  D+A    +E   +M +  A S+A
Sbjct: 457 IYEPWTAPPSIQTKANCIIGKDYPMPVVSHDSAS---KECKRKMGEAYALSKA 506


>Medtr4g011370.2 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 491

 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 8   LLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPELSRLPTEW 67
           L+D+D   +   W ++S +     + +RI +P   G K DP+G+Y+R +LP L  +P  +
Sbjct: 398 LIDSDWAINNGNWMWLSCS-SFFYQYNRIYSPTTFGKKYDPDGDYIRHFLPVLKDMPKAY 456

Query: 68  IHHPWNAPESVLQAAGIELGSNYPLP 93
           I+ PW AP S+   A   +G +YP+P
Sbjct: 457 IYEPWTAPPSIQTKANCIIGKDYPMP 482