Miyakogusa Predicted Gene

Lj1g3v3316260.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3316260.2 tr|I3T692|I3T692_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2
SV=1,96.13,0,RuBisCO_small,Ribulose bisphosphate carboxylase small
chain, domain; RbcS,Ribulose-1,5-bisphosphate ,CUFF.30679.2
         (181 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g007120.1 | ribulose bisphosphate carboxylase small chain ...   301   3e-82
Medtr7g007120.3 | ribulose bisphosphate carboxylase small chain ...   300   5e-82
Medtr7g007230.1 | ribulose bisphosphate carboxylase small chain ...   300   5e-82
Medtr7g007200.1 | ribulose bisphosphate carboxylase small chain ...   300   5e-82
Medtr7g007220.1 | ribulose bisphosphate carboxylase small chain ...   300   5e-82
Medtr7g007120.2 | ribulose bisphosphate carboxylase small chain ...   299   1e-81
Medtr6g018310.1 | ribulose bisphosphate carboxylase small chain ...   298   2e-81
Medtr6g018300.1 | ribulose bisphosphate carboxylase small chain ...   290   5e-79
Medtr7g007210.1 | ribulose bisphosphate carboxylase small chain ...   270   4e-73
Medtr4g127870.1 | ribulose bisphosphate carboxylase small chain ...   180   6e-46

>Medtr7g007120.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1349845-1351124 | 20130731
          Length = 181

 Score =  301 bits (770), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 139/168 (82%), Positives = 147/168 (87%)

Query: 14  INGASPAQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETL 73
           +N  S  Q+  VAPF GLKSMAGFPV K N DITSI +NGGRV CMQVWPP+GKKKFETL
Sbjct: 14  VNRVSSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETL 73

Query: 74  SYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMF 133
           SYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKLP+F
Sbjct: 74  SYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLF 133

Query: 134 GCSDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           G +DA+QVLKELDE V AYPNAFVRIIGFDNVRQVQCISFIAH PA Y
Sbjct: 134 GATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPAVY 181


>Medtr7g007120.3 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1357852-1358991 | 20130731
          Length = 181

 Score =  300 bits (768), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 139/168 (82%), Positives = 147/168 (87%)

Query: 14  INGASPAQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETL 73
           +N AS  Q+  VAPF GLKSMAGFPV K N DITSI +NGGRV CMQVWPP+GKKKFETL
Sbjct: 14  VNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETL 73

Query: 74  SYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMF 133
           SYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKLP+F
Sbjct: 74  SYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLF 133

Query: 134 GCSDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           G +DA+QVLKELDE V AYPNAFVRIIGFDNVRQVQCISFIAH P  Y
Sbjct: 134 GATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPEVY 181


>Medtr7g007230.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1393512-1395086 | 20130731
          Length = 181

 Score =  300 bits (768), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 138/168 (82%), Positives = 147/168 (87%)

Query: 14  INGASPAQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETL 73
           +N ASP Q+  VAPF GLKSMAGFP+ K N DITSI +NGGRV CMQVWPP+GKKKFETL
Sbjct: 14  VNRASPVQSGAVAPFVGLKSMAGFPITKVNKDITSITSNGGRVNCMQVWPPIGKKKFETL 73

Query: 74  SYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMF 133
           SYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKLP+F
Sbjct: 74  SYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLF 133

Query: 134 GCSDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           G +DA+QVLKELDE V AYPNAFVRIIGFD VRQVQCISFIAH P  Y
Sbjct: 134 GATDASQVLKELDEVVDAYPNAFVRIIGFDKVRQVQCISFIAHTPDVY 181


>Medtr7g007200.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1373181-1374551 | 20130731
          Length = 181

 Score =  300 bits (768), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 138/168 (82%), Positives = 147/168 (87%)

Query: 14  INGASPAQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETL 73
           +N AS  Q+  VAPF GLKSMAGFP+ K N DITSI +NGGRV CMQVWPP+GKKKFETL
Sbjct: 14  VNRASSVQSGAVAPFVGLKSMAGFPITKVNKDITSITSNGGRVNCMQVWPPIGKKKFETL 73

Query: 74  SYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMF 133
           SYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKLP+F
Sbjct: 74  SYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLF 133

Query: 134 GCSDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           G +DA+QVLKELDE V AYPNAFVRIIGFDNVRQVQCISFIAH P  Y
Sbjct: 134 GATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPEVY 181


>Medtr7g007220.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1389672-1390718 | 20130731
          Length = 181

 Score =  300 bits (768), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 139/168 (82%), Positives = 147/168 (87%)

Query: 14  INGASPAQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETL 73
           +N AS  Q+  VAPF GLKSMAGFPV K N DITSI +NGGRV CMQVWPP+GKKKFETL
Sbjct: 14  VNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETL 73

Query: 74  SYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMF 133
           SYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKLP+F
Sbjct: 74  SYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLF 133

Query: 134 GCSDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           G +DA+QVLKELDE V AYPNAFVRIIGFDNVRQVQCISFIAH P  Y
Sbjct: 134 GATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPDVY 181


>Medtr7g007120.2 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1349854-1358991 | 20130731
          Length = 181

 Score =  299 bits (765), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 138/168 (82%), Positives = 146/168 (86%)

Query: 14  INGASPAQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETL 73
           +N  S  Q+  VAPF GLKSMAGFPV K N DITSI +NGGRV CMQVWPP+GKKKFETL
Sbjct: 14  VNRVSSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETL 73

Query: 74  SYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMF 133
           SYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKLP+F
Sbjct: 74  SYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLF 133

Query: 134 GCSDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           G +DA+QVLKELDE V AYPNAFVRIIGFDNVRQVQCISFIAH P  Y
Sbjct: 134 GATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPEVY 181


>Medtr6g018310.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr6:7009014-7010704 | 20130731
          Length = 180

 Score =  298 bits (762), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 151/169 (89%), Gaps = 1/169 (0%)

Query: 14  INGASPAQASMVAPFTGLKSMAGFPV-RKTNNDITSIANNGGRVQCMQVWPPVGKKKFET 72
           ++ AS  QA++VAPFTGLKS A FPV +KTNNDITSIA+NGGRV CMQVWPP+GKKKFET
Sbjct: 12  VSRASSTQANLVAPFTGLKSSAAFPVTKKTNNDITSIASNGGRVNCMQVWPPIGKKKFET 71

Query: 73  LSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPM 132
           LSYLPPLT EQL KEVEYL+RKGWVPCLEFE EKGFVYRENH SPGYYDGRYWTMWKLP+
Sbjct: 72  LSYLPPLTEEQLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGRYWTMWKLPL 131

Query: 133 FGCSDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           FG +D++QVLKEL EA  AYP +F+RIIGFDNVRQVQCISFIAH PA Y
Sbjct: 132 FGATDSSQVLKELAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTPATY 180


>Medtr6g018300.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr6:7006187-7007659 | 20130731
          Length = 177

 Score =  290 bits (742), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 146/162 (90%), Gaps = 1/162 (0%)

Query: 21  QASMVAPFTGLKSMAGFPV-RKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPL 79
            A++VAPFTGLKS AGFPV +KTNNDITSI +NGGRV CMQVWPP+GKKKFETLSYLPPL
Sbjct: 16  SANLVAPFTGLKSSAGFPVTKKTNNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPL 75

Query: 80  TTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDAA 139
           T +QL KEVEYL+RKGWVPCLEFE EKGFVYRENH SPGYYDGRYWTMWKLP+FG +D++
Sbjct: 76  TEDQLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDSS 135

Query: 140 QVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           QVLKEL EA  AYP +F+RIIGFDNVRQVQCISFIAH PA Y
Sbjct: 136 QVLKELAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTPATY 177


>Medtr7g007210.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1383567-1386475 | 20130731
          Length = 192

 Score =  270 bits (691), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 125/151 (82%), Positives = 133/151 (88%)

Query: 14  INGASPAQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETL 73
           +N AS  Q+  VAPF GLKSMAGFPV K N DITSI +NGGRV CMQVWPP+GKKKFETL
Sbjct: 14  VNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETL 73

Query: 74  SYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMF 133
           SYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKLP+F
Sbjct: 74  SYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLF 133

Query: 134 GCSDAAQVLKELDEAVKAYPNAFVRIIGFDN 164
           G +DA+QVLKELDE V AYPNAFVRIIGFDN
Sbjct: 134 GATDASQVLKELDEVVVAYPNAFVRIIGFDN 164


>Medtr4g127870.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr4:53193172-53191727 | 20130731
          Length = 173

 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 71/129 (55%), Positives = 101/129 (78%), Gaps = 1/129 (0%)

Query: 51  NNGGRVQCMQVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVY 110
           +NG ++ CM+ W P+  KKFETLSYLPPL+ + + KE++Y+L+K W PCLEF+ E G ++
Sbjct: 41  SNGSKIHCMKTWNPINNKKFETLSYLPPLSDDSIAKEIDYMLKKRWTPCLEFD-EFGCIH 99

Query: 111 RENHKSPGYYDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQC 170
           R N + PGYYDGRYWT+WKLPMFGC+D++QVL E++E  K YPNA++R + FDN R +Q 
Sbjct: 100 RANSQMPGYYDGRYWTLWKLPMFGCNDSSQVLNEINECKKTYPNAYIRCLAFDNKRHMQA 159

Query: 171 ISFIAHRPA 179
           ++F+ H+P 
Sbjct: 160 MAFVIHKPT 168