Miyakogusa Predicted Gene

Lj1g3v3316260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3316260.1 tr|I3T692|I3T692_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2
SV=1,95.58,0,RuBisCO_small,Ribulose bisphosphate carboxylase small
chain, domain; RbcS,Ribulose-1,5-bisphosphate ,CUFF.30679.1
         (181 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g018310.1 | ribulose bisphosphate carboxylase small chain ...   312   1e-85
Medtr7g007120.1 | ribulose bisphosphate carboxylase small chain ...   306   5e-84
Medtr7g007200.1 | ribulose bisphosphate carboxylase small chain ...   306   9e-84
Medtr7g007220.1 | ribulose bisphosphate carboxylase small chain ...   306   9e-84
Medtr7g007120.2 | ribulose bisphosphate carboxylase small chain ...   305   2e-83
Medtr7g007120.3 | ribulose bisphosphate carboxylase small chain ...   304   2e-83
Medtr7g007230.1 | ribulose bisphosphate carboxylase small chain ...   304   2e-83
Medtr6g018300.1 | ribulose bisphosphate carboxylase small chain ...   304   4e-83
Medtr7g007210.1 | ribulose bisphosphate carboxylase small chain ...   276   9e-75
Medtr4g127870.1 | ribulose bisphosphate carboxylase small chain ...   181   3e-46

>Medtr6g018310.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr6:7009014-7010704 | 20130731
          Length = 180

 Score =  312 bits (800), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 144/179 (80%), Positives = 160/179 (89%), Gaps = 1/179 (0%)

Query: 4   SMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPV-RKTNTDITSIASNGGRVQCMQVW 62
           ++I+S+AVTT++ AS  QAN+VAPFTGLKS A FPV +KTN DITSIASNGGRV CMQVW
Sbjct: 2   ALISSAAVTTVSRASSTQANLVAPFTGLKSSAAFPVTKKTNNDITSIASNGGRVNCMQVW 61

Query: 63  PPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDG 122
           PP+GKKKFETLSYLPPLT EQL KEVEYL+RKGWVPCLEFE EKGFVYRENH SPGYYDG
Sbjct: 62  PPIGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDG 121

Query: 123 RYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           RYWTMWKLP+FG +D++QVLKEL EA  AYP +F+RIIGFDNVRQVQCISFIAH PA Y
Sbjct: 122 RYWTMWKLPLFGATDSSQVLKELAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTPATY 180


>Medtr7g007120.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1349845-1351124 | 20130731
          Length = 181

 Score =  306 bits (785), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 149/171 (87%)

Query: 11  VTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQVWPPVGKKKF 70
           VTT+N  S  Q+  VAPF GLKSMAGFPV K N DITSI SNGGRV CMQVWPP+GKKKF
Sbjct: 11  VTTVNRVSSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKF 70

Query: 71  ETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKL 130
           ETLSYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKL
Sbjct: 71  ETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKL 130

Query: 131 PMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           P+FG +DA+QVLKELDE V AYP AFVRIIGFDNVRQVQCISFIAH PA Y
Sbjct: 131 PLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPAVY 181


>Medtr7g007200.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1373181-1374551 | 20130731
          Length = 181

 Score =  306 bits (783), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 141/171 (82%), Positives = 149/171 (87%)

Query: 11  VTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQVWPPVGKKKF 70
           VTT+N AS  Q+  VAPF GLKSMAGFP+ K N DITSI SNGGRV CMQVWPP+GKKKF
Sbjct: 11  VTTVNRASSVQSGAVAPFVGLKSMAGFPITKVNKDITSITSNGGRVNCMQVWPPIGKKKF 70

Query: 71  ETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKL 130
           ETLSYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKL
Sbjct: 71  ETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKL 130

Query: 131 PMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           P+FG +DA+QVLKELDE V AYP AFVRIIGFDNVRQVQCISFIAH P  Y
Sbjct: 131 PLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPEVY 181


>Medtr7g007220.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1389672-1390718 | 20130731
          Length = 181

 Score =  306 bits (783), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 149/171 (87%)

Query: 11  VTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQVWPPVGKKKF 70
           VTT+N AS  Q+  VAPF GLKSMAGFPV K N DITSI SNGGRV CMQVWPP+GKKKF
Sbjct: 11  VTTVNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKF 70

Query: 71  ETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKL 130
           ETLSYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKL
Sbjct: 71  ETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKL 130

Query: 131 PMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           P+FG +DA+QVLKELDE V AYP AFVRIIGFDNVRQVQCISFIAH P  Y
Sbjct: 131 PLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPDVY 181


>Medtr7g007120.2 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1349854-1358991 | 20130731
          Length = 181

 Score =  305 bits (780), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 141/171 (82%), Positives = 148/171 (86%)

Query: 11  VTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQVWPPVGKKKF 70
           VTT+N  S  Q+  VAPF GLKSMAGFPV K N DITSI SNGGRV CMQVWPP+GKKKF
Sbjct: 11  VTTVNRVSSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKF 70

Query: 71  ETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKL 130
           ETLSYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKL
Sbjct: 71  ETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKL 130

Query: 131 PMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           P+FG +DA+QVLKELDE V AYP AFVRIIGFDNVRQVQCISFIAH P  Y
Sbjct: 131 PLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPEVY 181


>Medtr7g007120.3 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1357852-1358991 | 20130731
          Length = 181

 Score =  304 bits (779), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 141/170 (82%), Positives = 148/170 (87%)

Query: 12  TTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQVWPPVGKKKFE 71
           TT+N AS  Q+  VAPF GLKSMAGFPV K N DITSI SNGGRV CMQVWPP+GKKKFE
Sbjct: 12  TTVNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFE 71

Query: 72  TLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLP 131
           TLSYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKLP
Sbjct: 72  TLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLP 131

Query: 132 MFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           +FG +DA+QVLKELDE V AYP AFVRIIGFDNVRQVQCISFIAH P  Y
Sbjct: 132 LFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPEVY 181


>Medtr7g007230.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1393512-1395086 | 20130731
          Length = 181

 Score =  304 bits (779), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 148/170 (87%)

Query: 12  TTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQVWPPVGKKKFE 71
           TT+N ASP Q+  VAPF GLKSMAGFP+ K N DITSI SNGGRV CMQVWPP+GKKKFE
Sbjct: 12  TTVNRASPVQSGAVAPFVGLKSMAGFPITKVNKDITSITSNGGRVNCMQVWPPIGKKKFE 71

Query: 72  TLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLP 131
           TLSYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKLP
Sbjct: 72  TLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLP 131

Query: 132 MFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           +FG +DA+QVLKELDE V AYP AFVRIIGFD VRQVQCISFIAH P  Y
Sbjct: 132 LFGATDASQVLKELDEVVDAYPNAFVRIIGFDKVRQVQCISFIAHTPDVY 181


>Medtr6g018300.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr6:7006187-7007659 | 20130731
          Length = 177

 Score =  304 bits (778), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 142/179 (79%), Positives = 158/179 (88%), Gaps = 4/179 (2%)

Query: 4   SMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPV-RKTNTDITSIASNGGRVQCMQVW 62
           ++I+S+AVTT+N  S   AN+VAPFTGLKS AGFPV +KTN DITSI SNGGRV CMQVW
Sbjct: 2   ALISSAAVTTVNRVS---ANLVAPFTGLKSSAGFPVTKKTNNDITSITSNGGRVNCMQVW 58

Query: 63  PPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDG 122
           PP+GKKKFETLSYLPPLT +QL KEVEYL+RKGWVPCLEFE EKGFVYRENH SPGYYDG
Sbjct: 59  PPIGKKKFETLSYLPPLTEDQLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDG 118

Query: 123 RYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           RYWTMWKLP+FG +D++QVLKEL EA  AYP +F+RIIGFDNVRQVQCISFIAH PA Y
Sbjct: 119 RYWTMWKLPLFGATDSSQVLKELAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTPATY 177


>Medtr7g007210.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1383567-1386475 | 20130731
          Length = 192

 Score =  276 bits (706), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 128/154 (83%), Positives = 135/154 (87%)

Query: 11  VTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQVWPPVGKKKF 70
           VTT+N AS  Q+  VAPF GLKSMAGFPV K N DITSI SNGGRV CMQVWPP+GKKKF
Sbjct: 11  VTTVNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKF 70

Query: 71  ETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKL 130
           ETLSYLPPLT EQL KEVEYL+RKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKL
Sbjct: 71  ETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKL 130

Query: 131 PMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDN 164
           P+FG +DA+QVLKELDE V AYP AFVRIIGFDN
Sbjct: 131 PLFGATDASQVLKELDEVVVAYPNAFVRIIGFDN 164


>Medtr4g127870.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr4:53193172-53191727 | 20130731
          Length = 173

 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 71/128 (55%), Positives = 100/128 (78%), Gaps = 1/128 (0%)

Query: 51  SNGGRVQCMQVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVY 110
           SNG ++ CM+ W P+  KKFETLSYLPPL+ + + KE++Y+L+K W PCLEF+ E G ++
Sbjct: 41  SNGSKIHCMKTWNPINNKKFETLSYLPPLSDDSIAKEIDYMLKKRWTPCLEFD-EFGCIH 99

Query: 111 RENHKSPGYYDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQC 170
           R N + PGYYDGRYWT+WKLPMFGC+D++QVL E++E  K YP A++R + FDN R +Q 
Sbjct: 100 RANSQMPGYYDGRYWTLWKLPMFGCNDSSQVLNEINECKKTYPNAYIRCLAFDNKRHMQA 159

Query: 171 ISFIAHRP 178
           ++F+ H+P
Sbjct: 160 MAFVIHKP 167