Miyakogusa Predicted Gene

Lj1g3v3244510.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3244510.2 Non Characterized Hit- tr|G7KVA4|G7KVA4_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,60.2,0.000000000000005, ,CUFF.30254.2
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g082970.1 | transmembrane protein, putative | LC | chr7:31...   107   4e-24
Medtr4g478210.1 | hypothetical protein | HC | chr4:30026185-3002...    52   1e-07

>Medtr7g082970.1 | transmembrane protein, putative | LC |
           chr7:31836637-31834056 | 20130731
          Length = 211

 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 49/51 (96%)

Query: 84  GETKRKFESVYEGGTMNTPDSGKVLQYWHCCGSEDPFDPGCTASPHSSYDD 134
           GETKRKFESV+EGGTMNTP SGKVLQYWHCCGSEDPFD GCTASPHSSYDD
Sbjct: 161 GETKRKFESVHEGGTMNTPGSGKVLQYWHCCGSEDPFDIGCTASPHSSYDD 211



 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 66/98 (67%), Gaps = 10/98 (10%)

Query: 1  MALSFCNNHL-LHLN--KIPFALQSQRTPSSNTTYTSLLQFPSIRCCSTLNQKNSIN--L 55
          MAL F +++L LHLN  K P A QSQ  PSS       LQFPSI+C S+ N K S N  L
Sbjct: 1  MALMFSSHNLPLHLNYNKTPSAFQSQIIPSSKPN-IHFLQFPSIQCSSSSNNKTSSNINL 59

Query: 56 NTCKNCKTQFDPALNHPRACRFHTAHYGG----ETKRK 89
           TCKNCKTQFDP LNHP ACRFHTAH+GG    ET R+
Sbjct: 60 RTCKNCKTQFDPQLNHPLACRFHTAHFGGIIEPETLRR 97


>Medtr4g478210.1 | hypothetical protein | HC |
           chr4:30026185-30023913 | 20130731
          Length = 98

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 58  CKNCKTQFDPALNHPRACRFHTAHYGGETKRKFESVYEGGTMNTPDSGKVLQYWHCCGSE 117
           CK CK  ++PA N   +CRFH + +        +  YE G  + P + K   ++ CCG+E
Sbjct: 24  CKRCKQTYNPASNSSTSCRFHPSFFVCRRHDDQKRYYELGPDDPPYAAK---FYDCCGAE 80

Query: 118 DPFDPGCTASPHSSYDD 134
           DP   GCT   H SYD+
Sbjct: 81  DPEATGCTTYFHVSYDE 97