Miyakogusa Predicted Gene

Lj1g3v3219210.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3219210.1 Non Characterized Hit- tr|B4FWV4|B4FWV4_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,33.95,2e-16,seg,NULL;
PROKAR_LIPOPROTEIN,NULL; coiled-coil,NULL,CUFF.30226.1
         (269 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g024480.1 | transmembrane protein, putative | HC | chr7:80...   300   1e-81
Medtr7g024480.2 | transmembrane protein, putative | HC | chr7:80...   254   6e-68
Medtr2g096720.1 | transmembrane protein, putative | HC | chr2:41...   127   2e-29

>Medtr7g024480.1 | transmembrane protein, putative | HC |
           chr7:8057325-8058800 | 20130731
          Length = 293

 Score =  300 bits (768), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/280 (61%), Positives = 193/280 (68%), Gaps = 22/280 (7%)

Query: 1   MKXXXXXXXXXXIVFGCXXXXXXXXXXXXXWWKKRIINREIENDYGS--PVKELFNMFCW 58
           MK          IVFGC             WWKK+II REIENDYG+  P+KELF MFCW
Sbjct: 1   MKSLSSVGLGLSIVFGCLLLALVAEVYYLLWWKKKIIKREIENDYGNGNPLKELFYMFCW 60

Query: 59  KRPSSSSLRQNGFTPRELCSSVRIGENLVYNPELQAQSQTNKGFLFKPFGEDGLEEEYMR 118
           KRPS+S LRQ GFTP ELCSS+RI +N V++P    Q QT+K FLFKP+GED ++ +YM 
Sbjct: 61  KRPSTS-LRQTGFTPPELCSSMRINDNFVHDP----QVQTSKEFLFKPYGEDVIDADYMM 115

Query: 119 QQ---GLFGPPRFLFPIIEESKEDLESQDSK----SRGRSLGDLLVVETPYLXXXXXXX- 170
           Q    GL G PRFLF I+EESKEDLES+D K    SRGRSLGDLL VETPYL        
Sbjct: 116 QHHHDGLLGHPRFLFTIVEESKEDLESEDGKCGKDSRGRSLGDLLDVETPYLTPIASPHF 175

Query: 171 -XXXXXXXXXXXXXQHGFNPLFESATDAEFNRMKSSPPPKFKFLQEAEEKLRRKLQ-DNE 228
                         QHGFNPLFES TDAEFNR+KSSPPPKFKFLQEAEEKLRRK+Q DN+
Sbjct: 176 FTPMNCSPYCSPYNQHGFNPLFESTTDAEFNRLKSSPPPKFKFLQEAEEKLRRKMQDDNK 235

Query: 229 G-NGDEVS---ITVVVDKKSERDVN-HQSHLPQYHSSTSQ 263
           G NG+EV    IT++VDKK ER+VN HQ HL QYHSSTSQ
Sbjct: 236 GINGNEVDNSLITIIVDKKYEREVNHHQCHLQQYHSSTSQ 275


>Medtr7g024480.2 | transmembrane protein, putative | HC |
           chr7:8057226-8058800 | 20130731
          Length = 237

 Score =  254 bits (649), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 145/224 (64%), Positives = 164/224 (73%), Gaps = 20/224 (8%)

Query: 55  MFCWKRPSSSSLRQNGFTPRELCSSVRIGENLVYNPELQAQSQTNKGFLFKPFGEDGLEE 114
           MFCWKRPS+S LRQ GFTP ELCSS+RI +N V++P    Q QT+K FLFKP+GED ++ 
Sbjct: 1   MFCWKRPSTS-LRQTGFTPPELCSSMRINDNFVHDP----QVQTSKEFLFKPYGEDVIDA 55

Query: 115 EYMRQQ---GLFGPPRFLFPIIEESKEDLESQDSK----SRGRSLGDLLVVETPYLXXXX 167
           +YM Q    GL G PRFLF I+EESKEDLES+D K    SRGRSLGDLL VETPYL    
Sbjct: 56  DYMMQHHHDGLLGHPRFLFTIVEESKEDLESEDGKCGKDSRGRSLGDLLDVETPYLTPIA 115

Query: 168 XXX--XXXXXXXXXXXXXQHGFNPLFESATDAEFNRMKSSPPPKFKFLQEAEEKLRRKLQ 225
                             QHGFNPLFES TDAEFNR+KSSPPPKFKFLQEAEEKLRRK+Q
Sbjct: 116 SPHFFTPMNCSPYCSPYNQHGFNPLFESTTDAEFNRLKSSPPPKFKFLQEAEEKLRRKMQ 175

Query: 226 -DNEG-NGDEVS---ITVVVDKKSERDVN-HQSHLPQYHSSTSQ 263
            DN+G NG+EV    IT++VDKK ER+VN HQ HL QYHSSTSQ
Sbjct: 176 DDNKGINGNEVDNSLITIIVDKKYEREVNHHQCHLQQYHSSTSQ 219


>Medtr2g096720.1 | transmembrane protein, putative | HC |
           chr2:41307570-41309267 | 20130731
          Length = 272

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 131/275 (47%), Gaps = 47/275 (17%)

Query: 13  IVFGCXXXXXXXXXXXXXWWKKRIINREIENDYGSPVKELFNMFCWKRPSSSSLRQNGFT 72
           +VFG              WWKKR  + +IE +  +  K +F   CWK+   S    N   
Sbjct: 12  LVFGFIVLMAFAHIFYFLWWKKRRTHIDIEMEQSNYAKGVFYWGCWKKTPCSLHATN--- 68

Query: 73  PRELCSSVRIGENLVYNPELQAQSQTNKGFLFKPFGEDGLEEEYMRQQGLFGPPRFLFPI 132
             E     + G N  ++ EL       K  L K  GE+ LE E MR   L GPPRFLF I
Sbjct: 69  TSESVIREKEGTNQEHDLELGVD---GKDLLLKSNGEESLEVELMRLHNLPGPPRFLFTI 125

Query: 133 IEESKEDLESQDSKSR---------GRSLGDLLVVETPYLXXXXXXXXXXXXXXXXXXXX 183
            EE+KEDLES+D +SR          +SL D   +++P                      
Sbjct: 126 TEETKEDLESEDGRSRCGRSRKGSRTKSLSDF--IDSPM----------KCSLDPLESYK 173

Query: 184 QHGFNPLFESATDAEFNRMKSSPPPKFKFLQEAEEKL---------RRKLQDNEGNGDEV 234
             GFNPLFE + ++EFNR +SSPPPKFKFL++AEEKL         R+ L++N G+  E 
Sbjct: 174 HQGFNPLFEVSAESEFNRFRSSPPPKFKFLRDAEEKLYRRLMEESKRKALEENHGSVSEF 233

Query: 235 SITVVVDKKSERDVNHQSHLPQYHSSTSQVLPLGS 269
            +      K+  +V   +      +S+SQVLPL S
Sbjct: 234 EV------KNSLNVTKAT-----TTSSSQVLPLTS 257