Miyakogusa Predicted Gene
- Lj1g3v3219190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3219190.1 tr|Q4T9G9|Q4T9G9_TETNG Chromosome 12 SCAF7567,
whole genome shotgun sequence. (Fragment)
OS=Tetraodo,32.55,1e-18,Prenyltrans,Prenyltransferase/squalene
oxidase; no description,NULL; Terpenoid cyclases/Protein
pren,CUFF.30228.1
(341 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g024540.1 | geranylgeranyltransferase type I beta subunit ... 572 e-163
Medtr1g111160.1 | RAB geranylgeranyl transferase beta subunit 2 ... 139 3e-33
Medtr1g111160.3 | RAB geranylgeranyl transferase beta subunit 2 ... 139 3e-33
Medtr1g111160.7 | RAB geranylgeranyl transferase beta subunit 2 ... 129 4e-30
Medtr6g007165.1 | farnesyltranstransferase subunit beta | HC | c... 120 2e-27
Medtr1g111160.4 | RAB geranylgeranyl transferase beta subunit 2 ... 112 5e-25
Medtr1g111160.6 | RAB geranylgeranyl transferase beta subunit 2 ... 112 5e-25
Medtr1g111160.2 | RAB geranylgeranyl transferase beta subunit 2 ... 101 8e-22
Medtr1g111160.5 | RAB geranylgeranyl transferase beta subunit 2 ... 101 8e-22
>Medtr7g024540.1 | geranylgeranyltransferase type I beta subunit |
HC | chr7:8090726-8084951 | 20130731
Length = 355
Score = 572 bits (1473), Expect = e-163, Method: Compositional matrix adjust.
Identities = 272/341 (79%), Positives = 294/341 (86%)
Query: 1 MNKDLHVTFLQMMYQLLPSPYESQEINHLTLAYFIISGLDILNALHSVEKEAVANWVLSF 60
++KDLHVTF QMMY LLP+PYESQEINHLTLAYF+IS LDILN+LH VEKEAVANWVLSF
Sbjct: 15 IDKDLHVTFAQMMYHLLPNPYESQEINHLTLAYFVISSLDILNSLHLVEKEAVANWVLSF 74
Query: 61 QVHPGTKPDPNNGQFYGFHGSRTSQFPPDENGVLLHNNSHLASSYCALAILKIVGYXXXX 120
QV GT DPNNGQFYGFHGS+TSQFPPDENGV HNNSHLAS+YCALAILKIVGY
Sbjct: 75 QVQRGTTNDPNNGQFYGFHGSKTSQFPPDENGVFHHNNSHLASTYCALAILKIVGYDLSS 134
Query: 121 XXXXXXXXXXRNLQQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYIL 180
+NLQQPDGSFMPIH GGETDLRFVYCAA+ICFMLDNW+GMDKEK KDYIL
Sbjct: 135 LDSESMSSSMKNLQQPDGSFMPIHIGGETDLRFVYCAAAICFMLDNWNGMDKEKVKDYIL 194
Query: 181 LCQSYDGGFGLVPGAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQ 240
CQSYDGGFGLVPGAESHGGATYCA+ASLRLMG++ED D+PLLLDW LQ
Sbjct: 195 NCQSYDGGFGLVPGAESHGGATYCAIASLRLMGYVEDNVLSSCNLSSLIDLPLLLDWILQ 254
Query: 241 RQGTDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQYKYGGFSKFP 300
RQGTDGGFQGRPNK +DTCYAFWIG VLRILGGCNFVD A+R FLL+CQYKYGGFSKFP
Sbjct: 255 RQGTDGGFQGRPNKSTDTCYAFWIGGVLRILGGCNFVDNKALRGFLLSCQYKYGGFSKFP 314
Query: 301 EEFPDLYHTYYGFSAFSLLEESGLKSLCSELGITDLAAIGV 341
+FPDLYH+YYGF+AFSLLEESGLKSLCSELGIT++AA GV
Sbjct: 315 GDFPDLYHSYYGFAAFSLLEESGLKSLCSELGITNMAANGV 355
>Medtr1g111160.1 | RAB geranylgeranyl transferase beta subunit 2 |
HC | chr1:50207475-50203019 | 20130731
Length = 313
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 152/325 (46%), Gaps = 41/325 (12%)
Query: 6 HVTFLQMMYQLLPSPYESQEINHLTL--AYFIISGLDILNALHSVEKEAVANWVLSFQVH 63
HV ++ + Q +ES + HL + AY+ ++ L +L L +V+ V +W++S Q
Sbjct: 9 HVQYI-LSVQKKKDSFESVVMEHLRMNGAYWGLTTLHLLGKLDTVDVHEVVSWIMSCQHD 67
Query: 64 PGTKPDPNNGQFYGFHGSRTSQFPPDENGVLLHNNSHLASSYCALAILKIVGYXXXXXXX 123
G GF G+ + ++ H+ + A+ +L +
Sbjct: 68 EG-----------GFGGN-------------VGHDPHILYTLSAVQVLALFNKLDVIDAD 103
Query: 124 XXXXXXXRNLQQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQ 183
LQ DGSF GE D RF Y A +L ++ +KA YI+ CQ
Sbjct: 104 KVTNYIV-GLQNEDGSFSG-DIWGEVDTRFSYIAICCLSLLHRLDRINVDKAVKYIISCQ 161
Query: 184 SYDGGFGLVPGAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQG 243
+ DGGFG PG ESH G +C V +L + G ++ D LL W +RQ
Sbjct: 162 NMDGGFGCTPGGESHAGQIFCCVGALAIAGSLD-----------LVDKDLLGWWLCERQV 210
Query: 244 TDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQ-YKYGGFSKFPEE 302
GG GRP K D CY++W+ + L ++ +++ K + +F+L CQ GG S P++
Sbjct: 211 KSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWISKEKLIKFILDCQDTDNGGISDRPDD 270
Query: 303 FPDLYHTYYGFSAFSLLEESGLKSL 327
D++HTY+G + SLLE G+K +
Sbjct: 271 AVDVFHTYFGVAGLSLLEYPGVKPI 295
>Medtr1g111160.3 | RAB geranylgeranyl transferase beta subunit 2 |
HC | chr1:50207486-50203019 | 20130731
Length = 313
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 152/325 (46%), Gaps = 41/325 (12%)
Query: 6 HVTFLQMMYQLLPSPYESQEINHLTL--AYFIISGLDILNALHSVEKEAVANWVLSFQVH 63
HV ++ + Q +ES + HL + AY+ ++ L +L L +V+ V +W++S Q
Sbjct: 9 HVQYI-LSVQKKKDSFESVVMEHLRMNGAYWGLTTLHLLGKLDTVDVHEVVSWIMSCQHD 67
Query: 64 PGTKPDPNNGQFYGFHGSRTSQFPPDENGVLLHNNSHLASSYCALAILKIVGYXXXXXXX 123
G GF G+ + ++ H+ + A+ +L +
Sbjct: 68 EG-----------GFGGN-------------VGHDPHILYTLSAVQVLALFNKLDVIDAD 103
Query: 124 XXXXXXXRNLQQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQ 183
LQ DGSF GE D RF Y A +L ++ +KA YI+ CQ
Sbjct: 104 KVTNYIV-GLQNEDGSFSG-DIWGEVDTRFSYIAICCLSLLHRLDRINVDKAVKYIISCQ 161
Query: 184 SYDGGFGLVPGAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQG 243
+ DGGFG PG ESH G +C V +L + G ++ D LL W +RQ
Sbjct: 162 NMDGGFGCTPGGESHAGQIFCCVGALAIAGSLD-----------LVDKDLLGWWLCERQV 210
Query: 244 TDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQ-YKYGGFSKFPEE 302
GG GRP K D CY++W+ + L ++ +++ K + +F+L CQ GG S P++
Sbjct: 211 KSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWISKEKLIKFILDCQDTDNGGISDRPDD 270
Query: 303 FPDLYHTYYGFSAFSLLEESGLKSL 327
D++HTY+G + SLLE G+K +
Sbjct: 271 AVDVFHTYFGVAGLSLLEYPGVKPI 295
>Medtr1g111160.7 | RAB geranylgeranyl transferase beta subunit 2 |
HC | chr1:50207475-50203040 | 20130731
Length = 336
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 144/313 (46%), Gaps = 41/313 (13%)
Query: 6 HVTFLQMMYQLLPSPYESQEINHLTL--AYFIISGLDILNALHSVEKEAVANWVLSFQVH 63
HV ++ + Q +ES + HL + AY+ ++ L +L L +V+ V +W++S Q
Sbjct: 9 HVQYI-LSVQKKKDSFESVVMEHLRMNGAYWGLTTLHLLGKLDTVDVHEVVSWIMSCQHD 67
Query: 64 PGTKPDPNNGQFYGFHGSRTSQFPPDENGVLLHNNSHLASSYCALAILKIVGYXXXXXXX 123
G GF G+ + ++ H+ + A+ +L +
Sbjct: 68 EG-----------GFGGN-------------VGHDPHILYTLSAVQVLALFNKLDVIDAD 103
Query: 124 XXXXXXXRNLQQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQ 183
LQ DGSF GE D RF Y A +L ++ +KA YI+ CQ
Sbjct: 104 KVTNYIV-GLQNEDGSFSG-DIWGEVDTRFSYIAICCLSLLHRLDRINVDKAVKYIISCQ 161
Query: 184 SYDGGFGLVPGAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQG 243
+ DGGFG PG ESH G +C V +L + G ++ D LL W +RQ
Sbjct: 162 NMDGGFGCTPGGESHAGQIFCCVGALAIAGSLD-----------LVDKDLLGWWLCERQV 210
Query: 244 TDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQ-YKYGGFSKFPEE 302
GG GRP K D CY++W+ + L ++ +++ K + +F+L CQ GG S P++
Sbjct: 211 KSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWISKEKLIKFILDCQDTDNGGISDRPDD 270
Query: 303 FPDLYHTYYGFSA 315
D++HTY+G +
Sbjct: 271 AVDVFHTYFGVAG 283
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 134 QQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQSYDGGFGLVP 193
Q +G F + G + + + A + + + +D +K +YI+ Q+ DG F
Sbjct: 65 QHDEGGFGG-NVGHDPHILYTLSAVQVLALFNKLDVIDADKVTNYIVGLQNEDGSFSGDI 123
Query: 194 GAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQGTDGGFQGRPN 253
E +Y A+ L L+ ++ +V + + + Q DGGF P
Sbjct: 124 WGEVDTRFSYIAICCLSLLHRLD-----------RINVDKAVKYIISCQNMDGGFGCTPG 172
Query: 254 KPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQYKYGGFSKFPEEFPDLYHTYYGF 313
S F L I G + VDK+ + +L Q K GG + PE+ PD+ ++++
Sbjct: 173 GESHAGQIFCCVGALAIAGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVL 232
Query: 314 SAFSLLEE 321
S+ +++
Sbjct: 233 SSLIMIDR 240
>Medtr6g007165.1 | farnesyltranstransferase subunit beta | HC |
chr6:1486507-1479409 | 20130731
Length = 448
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 156/345 (45%), Gaps = 52/345 (15%)
Query: 1 MNKDLHVTFLQMMYQLLPSPYESQEINHLTLAYFIISGLDILNALHSVEKEAVANWVLSF 60
+ +D H+ +L + L S + + N L Y+II + +L +++ + N V
Sbjct: 47 LQRDKHIEYLSKGLRHLGSAFSVLDANRPWLCYWIIHAIALLG--ETIDDDLEDNTVDFL 104
Query: 61 QVHPGTKPDPNNGQFYGFHGSRTSQFPPDENGVLLHNNSHLASSYCALAILKIVG--YXX 118
DPN G F G G Q P HLA++Y ++ L +G
Sbjct: 105 N----RCQDPNGG-FAGGPG----QMP------------HLATTYASVNTLITLGGDKAL 143
Query: 119 XXXXXXXXXXXXRNLQQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDY 178
R ++QP+G F +H GE D+R Y A S+ +L+ + D+
Sbjct: 144 ASINRDKLYGFMRRMKQPNGGFR-MHDEGEIDVRACYTAISVASVLNILDDELIKNVGDF 202
Query: 179 ILLCQSYDGGFGLVPGAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWT 238
IL CQ+Y+GG PG+E+HGG T+C +A++ L+G D+P LLDW
Sbjct: 203 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIG-----------EANRLDLPRLLDWV 251
Query: 239 LQRQGTDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQYKYGGFSK 298
+ RQG + GFQGR NK D CY+FW G + +L V + + E A Q F+K
Sbjct: 252 VFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLQSVIEEQMVE---ASQ----SFTK 304
Query: 299 FPEEFPDLYHTYYGFS--AFSLLEESGLKSLCSELGITDLAAIGV 341
+ PD + G S A S + G+ CS +D+ IG+
Sbjct: 305 --SDAPDEKESSAGTSSHATSRIRREGISESCS----SDVKNIGL 343
>Medtr1g111160.4 | RAB geranylgeranyl transferase beta subunit 2 |
HC | chr1:50207475-50203019 | 20130731
Length = 259
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 129/287 (44%), Gaps = 40/287 (13%)
Query: 6 HVTFLQMMYQLLPSPYESQEINHLTL--AYFIISGLDILNALHSVEKEAVANWVLSFQVH 63
HV ++ + Q +ES + HL + AY+ ++ L +L L +V+ V +W++S Q
Sbjct: 9 HVQYI-LSVQKKKDSFESVVMEHLRMNGAYWGLTTLHLLGKLDTVDVHEVVSWIMSCQHD 67
Query: 64 PGTKPDPNNGQFYGFHGSRTSQFPPDENGVLLHNNSHLASSYCALAILKIVGYXXXXXXX 123
G GF G+ + ++ H+ + A+ +L +
Sbjct: 68 EG-----------GFGGN-------------VGHDPHILYTLSAVQVLALFNKLDVIDAD 103
Query: 124 XXXXXXXRNLQQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQ 183
LQ DGSF GE D RF Y A +L ++ +KA YI+ CQ
Sbjct: 104 KVTNYIV-GLQNEDGSFSG-DIWGEVDTRFSYIAICCLSLLHRLDRINVDKAVKYIISCQ 161
Query: 184 SYDGGFGLVPGAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQG 243
+ DGGFG PG ESH G +C V +L + G ++ D LL W +RQ
Sbjct: 162 NMDGGFGCTPGGESHAGQIFCCVGALAIAGSLD-----------LVDKDLLGWWLCERQV 210
Query: 244 TDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQ 290
GG GRP K D CY++W+ + L ++ +++ K + +F+L CQ
Sbjct: 211 KSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWISKEKLIKFILDCQ 257
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 134 QQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQSYDGGFGLVP 193
Q +G F + G + + + A + + + +D +K +YI+ Q+ DG F
Sbjct: 65 QHDEGGFGG-NVGHDPHILYTLSAVQVLALFNKLDVIDADKVTNYIVGLQNEDGSFSGDI 123
Query: 194 GAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQGTDGGFQGRPN 253
E +Y A+ L L+ ++ +V + + + Q DGGF P
Sbjct: 124 WGEVDTRFSYIAICCLSLLHRLD-----------RINVDKAVKYIISCQNMDGGFGCTPG 172
Query: 254 KPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQYKYGGFSKFPEEFPDLYHTYYGF 313
S F L I G + VDK+ + +L Q K GG + PE+ PD+ ++++
Sbjct: 173 GESHAGQIFCCVGALAIAGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVL 232
Query: 314 SAFSLLEE 321
S+ +++
Sbjct: 233 SSLIMIDR 240
>Medtr1g111160.6 | RAB geranylgeranyl transferase beta subunit 2 |
HC | chr1:50207475-50203019 | 20130731
Length = 259
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 129/287 (44%), Gaps = 40/287 (13%)
Query: 6 HVTFLQMMYQLLPSPYESQEINHLTL--AYFIISGLDILNALHSVEKEAVANWVLSFQVH 63
HV ++ + Q +ES + HL + AY+ ++ L +L L +V+ V +W++S Q
Sbjct: 9 HVQYI-LSVQKKKDSFESVVMEHLRMNGAYWGLTTLHLLGKLDTVDVHEVVSWIMSCQHD 67
Query: 64 PGTKPDPNNGQFYGFHGSRTSQFPPDENGVLLHNNSHLASSYCALAILKIVGYXXXXXXX 123
G GF G+ + ++ H+ + A+ +L +
Sbjct: 68 EG-----------GFGGN-------------VGHDPHILYTLSAVQVLALFNKLDVIDAD 103
Query: 124 XXXXXXXRNLQQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQ 183
LQ DGSF GE D RF Y A +L ++ +KA YI+ CQ
Sbjct: 104 KVTNYIV-GLQNEDGSFSG-DIWGEVDTRFSYIAICCLSLLHRLDRINVDKAVKYIISCQ 161
Query: 184 SYDGGFGLVPGAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQG 243
+ DGGFG PG ESH G +C V +L + G ++ D LL W +RQ
Sbjct: 162 NMDGGFGCTPGGESHAGQIFCCVGALAIAGSLD-----------LVDKDLLGWWLCERQV 210
Query: 244 TDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQ 290
GG GRP K D CY++W+ + L ++ +++ K + +F+L CQ
Sbjct: 211 KSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWISKEKLIKFILDCQ 257
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 134 QQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQSYDGGFGLVP 193
Q +G F + G + + + A + + + +D +K +YI+ Q+ DG F
Sbjct: 65 QHDEGGFGG-NVGHDPHILYTLSAVQVLALFNKLDVIDADKVTNYIVGLQNEDGSFSGDI 123
Query: 194 GAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQGTDGGFQGRPN 253
E +Y A+ L L+ ++ +V + + + Q DGGF P
Sbjct: 124 WGEVDTRFSYIAICCLSLLHRLD-----------RINVDKAVKYIISCQNMDGGFGCTPG 172
Query: 254 KPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQYKYGGFSKFPEEFPDLYHTYYGF 313
S F L I G + VDK+ + +L Q K GG + PE+ PD+ ++++
Sbjct: 173 GESHAGQIFCCVGALAIAGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVL 232
Query: 314 SAFSLLEE 321
S+ +++
Sbjct: 233 SSLIMIDR 240
>Medtr1g111160.2 | RAB geranylgeranyl transferase beta subunit 2 |
HC | chr1:50207475-50203019 | 20130731
Length = 253
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 123/282 (43%), Gaps = 40/282 (14%)
Query: 6 HVTFLQMMYQLLPSPYESQEINHLTL--AYFIISGLDILNALHSVEKEAVANWVLSFQVH 63
HV ++ + Q +ES + HL + AY+ ++ L +L L +V+ V +W++S Q
Sbjct: 9 HVQYI-LSVQKKKDSFESVVMEHLRMNGAYWGLTTLHLLGKLDTVDVHEVVSWIMSCQHD 67
Query: 64 PGTKPDPNNGQFYGFHGSRTSQFPPDENGVLLHNNSHLASSYCALAILKIVGYXXXXXXX 123
G GF G+ + ++ H+ + A+ +L +
Sbjct: 68 EG-----------GFGGN-------------VGHDPHILYTLSAVQVLALFNKLDVIDAD 103
Query: 124 XXXXXXXRNLQQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQ 183
LQ DGSF GE D RF Y A +L ++ +KA YI+ CQ
Sbjct: 104 KVTNYIV-GLQNEDGSFSG-DIWGEVDTRFSYIAICCLSLLHRLDRINVDKAVKYIISCQ 161
Query: 184 SYDGGFGLVPGAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQG 243
+ DGGFG PG ESH G +C V +L + G ++ D LL W +RQ
Sbjct: 162 NMDGGFGCTPGGESHAGQIFCCVGALAIAGSLD-----------LVDKDLLGWWLCERQV 210
Query: 244 TDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREF 285
GG GRP K D CY++W+ + L ++ +++ +F
Sbjct: 211 KSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWIRHRQWWDF 252
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 134 QQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQSYDGGFGLVP 193
Q +G F + G + + + A + + + +D +K +YI+ Q+ DG F
Sbjct: 65 QHDEGGFGG-NVGHDPHILYTLSAVQVLALFNKLDVIDADKVTNYIVGLQNEDGSFSGDI 123
Query: 194 GAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQGTDGGFQGRPN 253
E +Y A+ L L+ ++ +V + + + Q DGGF P
Sbjct: 124 WGEVDTRFSYIAICCLSLLHRLD-----------RINVDKAVKYIISCQNMDGGFGCTPG 172
Query: 254 KPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQYKYGGFSKFPEEFPDLYHTYYGF 313
S F L I G + VDK+ + +L Q K GG + PE+ PD+ ++++
Sbjct: 173 GESHAGQIFCCVGALAIAGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVL 232
Query: 314 SAFSLLEE 321
S+ +++
Sbjct: 233 SSLIMIDR 240
>Medtr1g111160.5 | RAB geranylgeranyl transferase beta subunit 2 |
HC | chr1:50207475-50203019 | 20130731
Length = 253
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 123/282 (43%), Gaps = 40/282 (14%)
Query: 6 HVTFLQMMYQLLPSPYESQEINHLTL--AYFIISGLDILNALHSVEKEAVANWVLSFQVH 63
HV ++ + Q +ES + HL + AY+ ++ L +L L +V+ V +W++S Q
Sbjct: 9 HVQYI-LSVQKKKDSFESVVMEHLRMNGAYWGLTTLHLLGKLDTVDVHEVVSWIMSCQHD 67
Query: 64 PGTKPDPNNGQFYGFHGSRTSQFPPDENGVLLHNNSHLASSYCALAILKIVGYXXXXXXX 123
G GF G+ + ++ H+ + A+ +L +
Sbjct: 68 EG-----------GFGGN-------------VGHDPHILYTLSAVQVLALFNKLDVIDAD 103
Query: 124 XXXXXXXRNLQQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQ 183
LQ DGSF GE D RF Y A +L ++ +KA YI+ CQ
Sbjct: 104 KVTNYIV-GLQNEDGSFSG-DIWGEVDTRFSYIAICCLSLLHRLDRINVDKAVKYIISCQ 161
Query: 184 SYDGGFGLVPGAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQG 243
+ DGGFG PG ESH G +C V +L + G ++ D LL W +RQ
Sbjct: 162 NMDGGFGCTPGGESHAGQIFCCVGALAIAGSLD-----------LVDKDLLGWWLCERQV 210
Query: 244 TDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREF 285
GG GRP K D CY++W+ + L ++ +++ +F
Sbjct: 211 KSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWIRHRQWWDF 252
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 134 QQPDGSFMPIHTGGETDLRFVYCAASICFMLDNWSGMDKEKAKDYILLCQSYDGGFGLVP 193
Q +G F + G + + + A + + + +D +K +YI+ Q+ DG F
Sbjct: 65 QHDEGGFGG-NVGHDPHILYTLSAVQVLALFNKLDVIDADKVTNYIVGLQNEDGSFSGDI 123
Query: 194 GAESHGGATYCAVASLRLMGFIEDXXXXXXXXXXXXDVPLLLDWTLQRQGTDGGFQGRPN 253
E +Y A+ L L+ ++ +V + + + Q DGGF P
Sbjct: 124 WGEVDTRFSYIAICCLSLLHRLD-----------RINVDKAVKYIISCQNMDGGFGCTPG 172
Query: 254 KPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQYKYGGFSKFPEEFPDLYHTYYGF 313
S F L I G + VDK+ + +L Q K GG + PE+ PD+ ++++
Sbjct: 173 GESHAGQIFCCVGALAIAGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVL 232
Query: 314 SAFSLLEE 321
S+ +++
Sbjct: 233 SSLIMIDR 240