Miyakogusa Predicted Gene

Lj1g3v3218060.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3218060.2 Non Characterized Hit- tr|I1JDQ5|I1JDQ5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38119 PE,59.43,0,RNA AND
EXPORT FACTOR BINDING PROTEIN,NULL; no description,Nucleotide-binding,
alpha-beta plait; RNA,CUFF.30217.2
         (183 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g024090.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   152   1e-37
Medtr4g063557.3 | RNA and export factor-binding protein | HC | c...   139   1e-33
Medtr4g063557.2 | RNA and export factor-binding protein | HC | c...   139   1e-33
Medtr4g063557.1 | RNA and export factor-binding protein | HC | c...   139   1e-33
Medtr3g065490.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   121   4e-28
Medtr7g024150.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    93   1e-19
Medtr5g084370.1 | transmembrane protein, putative | HC | chr5:36...    61   5e-10
Medtr5g041970.1 | RNA recognition motif protein | HC | chr5:1844...    60   1e-09
Medtr3g118240.1 | transmembrane protein, putative | LC | chr3:55...    56   2e-08
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ...    52   3e-07
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708...    50   1e-06
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165...    49   3e-06
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    49   3e-06
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    49   3e-06
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-...    48   5e-06
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701...    47   9e-06

>Medtr7g024090.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:7894145-7897152 | 20130731
          Length = 315

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/157 (59%), Positives = 107/157 (68%), Gaps = 18/157 (11%)

Query: 37  RHL------TRTTPYSVPPQPQVER---RR-----VVPEMDLEDDKVSENKGTKLYISNL 82
           RHL       R TPYS+     +ER   RR     V  EM L  D+  +   TKLY+SNL
Sbjct: 25  RHLGVRSNSVRITPYSISHSQMLEREALRRSNVDDVPQEMVL--DQPHQKPITKLYLSNL 82

Query: 83  DYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIKKYNNMRLDG 142
           D  VSN DI LLFSEEGEL+ Y IHYD+ GRSKGTAEVVF RQS+ALAA+K+YNNM+LDG
Sbjct: 83  DDRVSNEDIHLLFSEEGELESYSIHYDQFGRSKGTAEVVFTRQSEALAALKRYNNMKLDG 142

Query: 143 KPLQIELVGSSLVTPAPAVVPLSQNSLQGRLNHALVR 179
           K LQIELVG+SLVTPA A  PL Q+SL G+ N    R
Sbjct: 143 KTLQIELVGTSLVTPAAA--PLGQSSLLGKPNDVFAR 177


>Medtr4g063557.3 | RNA and export factor-binding protein | HC |
           chr4:23458836-23463583 | 20130731
          Length = 263

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 80/89 (89%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           GTKLYISNLDYGVSN DIK LFSE G+LKR+G+HYD+SGRSKGTAEVVF R+ DA+AA+K
Sbjct: 93  GTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVK 152

Query: 134 KYNNMRLDGKPLQIELVGSSLVTPAPAVV 162
           +YNN++LDGKP++IE+VG+++ TP  A V
Sbjct: 153 RYNNVQLDGKPMKIEIVGTNISTPGAAPV 181


>Medtr4g063557.2 | RNA and export factor-binding protein | HC |
           chr4:23458836-23463583 | 20130731
          Length = 263

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 80/89 (89%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           GTKLYISNLDYGVSN DIK LFSE G+LKR+G+HYD+SGRSKGTAEVVF R+ DA+AA+K
Sbjct: 93  GTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVK 152

Query: 134 KYNNMRLDGKPLQIELVGSSLVTPAPAVV 162
           +YNN++LDGKP++IE+VG+++ TP  A V
Sbjct: 153 RYNNVQLDGKPMKIEIVGTNISTPGAAPV 181


>Medtr4g063557.1 | RNA and export factor-binding protein | HC |
           chr4:23458840-23463583 | 20130731
          Length = 263

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 80/89 (89%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           GTKLYISNLDYGVSN DIK LFSE G+LKR+G+HYD+SGRSKGTAEVVF R+ DA+AA+K
Sbjct: 93  GTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVK 152

Query: 134 KYNNMRLDGKPLQIELVGSSLVTPAPAVV 162
           +YNN++LDGKP++IE+VG+++ TP  A V
Sbjct: 153 RYNNVQLDGKPMKIEIVGTNISTPGAAPV 181


>Medtr3g065490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:29610838-29605718 | 20130731
          Length = 291

 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 73/91 (80%)

Query: 75  TKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIKK 134
           TKLY+SNLD GV+N DI+ LFSE GELKRY +HYDK+G   G+AEVV+ R+SDA AA+K+
Sbjct: 109 TKLYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKR 168

Query: 135 YNNMRLDGKPLQIELVGSSLVTPAPAVVPLS 165
           YNN+ LDGKP++IE+VG++   P  A V +S
Sbjct: 169 YNNVLLDGKPMKIEIVGTNSALPVTARVNVS 199


>Medtr7g024150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           LC | chr7:7912696-7913367 | 20130731
          Length = 106

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 1/83 (1%)

Query: 77  LYISNLDY-GVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIKKY 135
           +Y  ++ Y  ++     LLFS+  EL+ Y IHYD+ G SKGTAEV F R+SDALAA+++ 
Sbjct: 11  VYFGDIGYENLAARSCLLLFSKNDELEGYSIHYDQFGESKGTAEVFFTRESDALAALRRC 70

Query: 136 NNMRLDGKPLQIELVGSSLVTPA 158
           N M+L GK LQIELVG++LVTPA
Sbjct: 71  NQMKLYGKTLQIELVGTTLVTPA 93


>Medtr5g084370.1 | transmembrane protein, putative | HC |
           chr5:36405886-36403983 | 20130731
          Length = 198

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 44/65 (67%)

Query: 106 IHYDKSGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQIELVGSSLVTPAPAVVPLS 165
           + +       G+AEVV+ R+SDA AA+K+YNN+ LDGKP++IE+VG++   P  A V +S
Sbjct: 88  LKFHSCNLCVGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPVTARVNVS 147

Query: 166 QNSLQ 170
             + Q
Sbjct: 148 AMNRQ 152


>Medtr5g041970.1 | RNA recognition motif protein | HC |
           chr5:18447811-18445882 | 20130731
          Length = 86

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query: 115 KGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQIELVGSSLVTPAPAVVPLSQNSLQ 170
           KG+AEVV+ R+SDA  A+K+YNN+ LDGKP++IE+VG++   P  A   +S  + Q
Sbjct: 21  KGSAEVVYNRRSDAFTALKRYNNVLLDGKPMKIEIVGTNSELPVTARANVSAMNRQ 76


>Medtr3g118240.1 | transmembrane protein, putative | LC |
           chr3:55351113-55354462 | 20130731
          Length = 237

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 11/66 (16%)

Query: 116 GTAEVVFMRQSDALAAIKKYNNMRLDGKPLQIELVGSSLVTPAPAVVPLSQNSLQGRLNH 175
           G+ EVV+ R+SDA AA+K+YNN+ LDGKP++IE+VG++           S+ S+  R+N 
Sbjct: 118 GSFEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTN-----------SELSVTARVNV 166

Query: 176 ALVREQ 181
           + +  Q
Sbjct: 167 SAMNRQ 172


>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
           HC | chr1:27029234-27025443 | 20130731
          Length = 522

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 2/106 (1%)

Query: 45  YSVPPQPQVERRRVVPEMDLEDDKVSENKGTKLYISNLDYGVSNADIKLLFSEEGELKRY 104
           Y    Q +VER +++  + +E  K  ++ G+ +Y+ N+D  V + +++  FS  GE+   
Sbjct: 265 YVARAQKKVEREQILHHLFVE--KGLKHMGSNIYVKNIDTSVGDEELRDHFSACGEVLSA 322

Query: 105 GIHYDKSGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQIELV 150
            +  D  G SKG   V F    +A  ++  +N     GKPL ++  
Sbjct: 323 KVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFA 368


>Medtr1g019150.1 | polyadenylate-binding protein | HC |
           chr1:5708406-5713691 | 20130731
          Length = 647

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%)

Query: 61  EMDLEDDKVSENKGTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEV 120
           E  +++  V + +G  LY+ NLD  +++  +K +FSE G +  Y I  D +G S+G+  V
Sbjct: 301 EQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFV 360

Query: 121 VFMRQSDALAAIKKYNNMRLDGKPLQIELV 150
            F    +A  A+ + N   +  KPL + + 
Sbjct: 361 AFSTPEEASRALGEMNGKMIVSKPLYVAVA 390


>Medtr7g102730.1 | polyadenylate-binding protein | HC |
           chr7:41652502-41656607 | 20130731
          Length = 629

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 2/108 (1%)

Query: 45  YSVPPQPQVERRRVVPEMDLEDDK--VSENKGTKLYISNLDYGVSNADIKLLFSEEGELK 102
           Y    Q + ER +++ +   E  K  V + KG+ +Y+ N+D  VS+  ++  FS  G + 
Sbjct: 260 YVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTIT 319

Query: 103 RYGIHYDKSGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQIELV 150
              I  D  G SKG   V F    +A  A+  ++     GKPL + L 
Sbjct: 320 SAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLA 367


>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr1:28254735-28256581 | 20130731
          Length = 280

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 48  PPQPQVERRRVVPEMDLEDDKV-------SENKGTKLYISNLDYGVSNADIKLLFSEEGE 100
           PP P+ E  R         D+        S +   ++++ NL +GV N  ++ LF E+G+
Sbjct: 162 PPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQ 221

Query: 101 LKRYGIHYDK-SGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQI 147
           +    + YD+ SGRS+G   V F    +  +AI+  +   L+G+ +++
Sbjct: 222 VLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRV 269


>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr1:28254735-28256581 | 20130731
          Length = 280

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 48  PPQPQVERRRVVPEMDLEDDKV-------SENKGTKLYISNLDYGVSNADIKLLFSEEGE 100
           PP P+ E  R         D+        S +   ++++ NL +GV N  ++ LF E+G+
Sbjct: 162 PPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQ 221

Query: 101 LKRYGIHYDK-SGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQI 147
           +    + YD+ SGRS+G   V F    +  +AI+  +   L+G+ +++
Sbjct: 222 VLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRV 269


>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
           chr7:43324307-43322087 | 20130731
          Length = 318

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 76  KLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDK-SGRSKGTAEVVFMRQSDALAAIKK 134
           K+Y  NL +G+++ D++  F E+  L    I Y++ +GRS+G   V F       AA+  
Sbjct: 213 KIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNA 272

Query: 135 YNNMRLDGKPLQIELVGSSLVTPAPAVV 162
            N + + G+PL++ L  ++  +P+P V+
Sbjct: 273 MNGVEVQGRPLRLNL-AAARTSPSPPVI 299


>Medtr3g102040.1 | polyadenylate-binding protein | HC |
           chr3:47012095-47003272 | 20130731
          Length = 622

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           G  LY+ NLD  V++  +  LFSE G +    I  D  G S+G+  V F    +A  A+ 
Sbjct: 305 GANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALA 364

Query: 134 KYNNMRLDGKPLQI 147
           + N   + GKPL +
Sbjct: 365 EMNGKMVAGKPLYV 378