Miyakogusa Predicted Gene
- Lj1g3v3218010.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3218010.2 tr|C1E8G9|C1E8G9_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_59370
,37.24,3e-17,HOMEOBOX_2,Homeodomain; Homeodomain,Homeodomain;
Homeobox,Homeodomain; no description,Homeodomain-li,CUFF.30213.2
(256 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g115315.1 | wuschel-related homeobox protein | HC | chr1:5... 311 6e-85
Medtr1g115315.2 | wuschel-related homeobox protein | HC | chr1:5... 285 4e-77
Medtr3g115620.1 | wuschel-related homeobox protein | HC | chr3:5... 219 3e-57
Medtr7g023810.1 | homeodomain protein HB2 | HC | chr7:7798636-77... 203 1e-52
Medtr4g084550.1 | wuschel-related homeobox protein | HC | chr4:3... 73 3e-13
Medtr2g015000.1 | wuschel homeobox protein | HC | chr2:4393059-4... 72 4e-13
Medtr8g107210.1 | stenofolia-like protein | HC | chr8:45305362-4... 72 6e-13
Medtr4g063735.1 | wuschel-related homeobox protein | HC | chr4:2... 70 2e-12
Medtr7g025010.1 | wuschel-related homeobox protein, putative | L... 70 3e-12
Medtr5g081990.1 | wuschel-related homeobox protein | HC | chr5:3... 69 4e-12
Medtr1g019130.2 | wuschel-related homeobox protein | HC | chr1:5... 67 1e-11
Medtr7g060630.1 | wuschel-related homeobox protein | HC | chr7:2... 67 2e-11
Medtr4g088080.1 | wuschel homeobox protein | LC | chr4:34693672-... 67 2e-11
Medtr1g019130.1 | wuschel-related homeobox protein | HC | chr1:5... 67 2e-11
Medtr4g088070.1 | wuschel homeobox protein | LC | chr4:34685878-... 65 6e-11
Medtr5g021930.1 | wuschel-related homeobox protein | HC | chr5:8... 64 1e-10
Medtr8g095580.1 | wuschel-related homeobox-like protein | HC | c... 54 2e-07
Medtr6g027390.1 | wuschel-related homeobox protein | HC | chr6:9... 53 3e-07
Medtr3g088485.1 | wuschel-related homeobox-like protein | HC | c... 53 4e-07
Medtr7g086940.1 | wuschel-related homeobox protein | HC | chr7:3... 50 2e-06
>Medtr1g115315.1 | wuschel-related homeobox protein | HC |
chr1:52025791-52029215 | 20130731
Length = 264
Score = 311 bits (796), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/246 (65%), Positives = 187/246 (76%), Gaps = 18/246 (7%)
Query: 24 LMTDEQVETLRKQIAVYSTICEQLIDMHKTLSTHQDLAGVRLGGMYCDPLMASGGHKISS 83
+MTDEQ+ETLRKQIAVY+TICEQL++MHKTLS QDLAGVRLG +YCD LM + GHKI+S
Sbjct: 24 VMTDEQLETLRKQIAVYATICEQLVEMHKTLSAQQDLAGVRLGNLYCDSLM-TAGHKITS 82
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSK 143
RQRWTPT VQLQILERIF+ G GTPSKEKIKEI +LSQHGQISETNVYNWFQNRRARSK
Sbjct: 83 RQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSK 142
Query: 144 RKQQSVSQPSGANAESEVETEVDSKDKKTKSGEVVVQPTA----ENMCFQNPDVCPDLQY 199
RK Q+ +N ESEVETEVDSKDKKTK E Q +A EN+CFQN + C +LQY
Sbjct: 143 RKMQN---GGTSNTESEVETEVDSKDKKTKPEEFHSQQSAALGDENLCFQNQEKCSELQY 199
Query: 200 LSP---------ESDGGLRSTRGFDHVPSFDGMLSSSRSGYLTEKMEAPESYNLYQPAGG 250
L+ SDGG+RSTR V +D +LS+SR+ YL KME SYN+YQ A
Sbjct: 200 LNHGSNKTYSVFPSDGGIRSTRNLSGVSLYDEVLSNSRNDYLGGKMEVSGSYNIYQQA-E 258
Query: 251 DYDMSG 256
D++++G
Sbjct: 259 DFNLAG 264
>Medtr1g115315.2 | wuschel-related homeobox protein | HC |
chr1:52025869-52029102 | 20130731
Length = 262
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 147/223 (65%), Positives = 169/223 (75%), Gaps = 17/223 (7%)
Query: 24 LMTDEQVETLRKQIAVYSTICEQLIDMHKTLSTHQDLAGVRLGGMYCDPLMASGGHKISS 83
+MTDEQ+ETLRKQIAVY+TICEQL++MHKTLS QDLAGVRLG +YCD LM + GHKI+S
Sbjct: 24 VMTDEQLETLRKQIAVYATICEQLVEMHKTLSAQQDLAGVRLGNLYCDSLM-TAGHKITS 82
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSK 143
RQRWTPT VQLQILERIF+ G GTPSKEKIKEI +LSQHGQISETNVYNWFQNRRARSK
Sbjct: 83 RQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSK 142
Query: 144 RKQQSVSQPSGANAESEVETEVDSKDKKTKSGEVVVQPTA----ENMCFQNPDVCPDLQY 199
RK Q+ +N ESEVETEVDSKDKKTK E Q +A EN+CFQN + C +LQY
Sbjct: 143 RKMQN---GGTSNTESEVETEVDSKDKKTKPEEFHSQQSAALGDENLCFQNQEKCSELQY 199
Query: 200 LSP---------ESDGGLRSTRGFDHVPSFDGMLSSSRSGYLT 233
L+ SDGG+RSTR V +D +LS+S +L
Sbjct: 200 LNHGSNKTYSVFPSDGGIRSTRNLSGVSLYDEVLSNSSMLHLV 242
>Medtr3g115620.1 | wuschel-related homeobox protein | HC |
chr3:54113734-54116409 | 20130731
Length = 215
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/179 (61%), Positives = 139/179 (77%), Gaps = 11/179 (6%)
Query: 24 LMTDEQVETLRKQIAVYSTICEQLIDMHKTLSTHQDLAGVRLGGMYCDPLM-ASGGHKIS 82
+MTDEQ+E LR+QI+VY+TI +QL++MHK+++T DLAG+RLG +YCDPLM A GHKI+
Sbjct: 19 IMTDEQMELLRQQISVYTTISDQLVEMHKSITTQHDLAGLRLGNLYCDPLMMACSGHKIT 78
Query: 83 SRQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARS 142
SRQRWTP +QLQILERIF+ G GTP+K+KIK+IT +L QHGQISETNVYNWFQNRRARS
Sbjct: 79 SRQRWTPMPIQLQILERIFDEGNGTPTKQKIKDITIELGQHGQISETNVYNWFQNRRARS 138
Query: 143 KRKQQSVSQPSGANAESEVETEVDS-KDKKTKSGEVVVQ-------PTAENMCFQNPDV 193
KRKQ SV P+G +AE E +TEV+S K+ KT VQ ++M Q+PD+
Sbjct: 139 KRKQSSV--PAGNHAEPEADTEVESPKENKTCEESDQVQFFESLSPHRVKDMYLQSPDI 195
>Medtr7g023810.1 | homeodomain protein HB2 | HC |
chr7:7798636-7797897 | 20130731
Length = 183
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/192 (60%), Positives = 133/192 (69%), Gaps = 27/192 (14%)
Query: 22 ANLMTDEQVETLRKQIAVYSTICEQLIDMHKTLSTHQDLAGVRLGGMYCDPLMASGGHKI 81
N+MT+EQVETLRKQIAVYS I EQLI HKTLS+ QDL +G ++
Sbjct: 19 VNVMTNEQVETLRKQIAVYSVISEQLIQTHKTLSSQQDLT-------------LTGSTRL 65
Query: 82 SSRQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRAR 141
RQRWTPT VQLQ LERIFEA TGTPSKEKIKEITADL++HGQISET+VYNWFQNRRAR
Sbjct: 66 --RQRWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGQISETSVYNWFQNRRAR 123
Query: 142 SKRKQQSVSQPSGANAESEVETEVDSKDKKTKSGEVVVQPTAENMCFQNPDVCPDLQYLS 201
SK KQQ + N E EVETEVDS DKKT+ E+V +A+N+C Q L L+
Sbjct: 124 SKGKQQ-----NNVNDEPEVETEVDSNDKKTEP-EIVASQSAKNLCSQY------LADLN 171
Query: 202 PESDGGLRSTRG 213
ESD LR +R
Sbjct: 172 SESDDSLRRSRN 183
>Medtr4g084550.1 | wuschel-related homeobox protein | HC |
chr4:32905916-32907479 | 20130731
Length = 184
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW+PT VQL +LE ++ G TPS E+I++I + L Q G+I NV+ WFQN +AR ++K
Sbjct: 64 RWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQK 123
Query: 146 QQSVSQPSGANAESEVETEVDSKDKKTKSGEV 177
++ + + E E V KK + E
Sbjct: 124 RRRLEMEETTEDKKEKEKYVMGNSKKQEGAET 155
>Medtr2g015000.1 | wuschel homeobox protein | HC |
chr2:4393059-4395325 | 20130731
Length = 457
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSK 143
+ RW P Q++ILE IF +G P +E+I++I A L ++GQ+ + NV+ WFQNR++RSK
Sbjct: 53 KPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSK 112
Query: 144 RK 145
K
Sbjct: 113 HK 114
>Medtr8g107210.1 | stenofolia-like protein | HC |
chr8:45305362-45303362 | 20130731
Length = 358
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW PT QL+ LE ++ GT TPS E+I++ITA L + G+I NV+ WFQN +AR ++K
Sbjct: 96 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRKFGKIEGKNVFYWFQNHKARERQK 155
Query: 146 QQSVSQPSGANAESEVE 162
++ + + A +S +E
Sbjct: 156 RRRQMESAAAEFDSALE 172
>Medtr4g063735.1 | wuschel-related homeobox protein | HC |
chr4:23615955-23617663 | 20130731
Length = 257
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW PT Q+ +LE +++ G TPS E+I+EITA L +G I NV+ WFQN +AR ++K
Sbjct: 25 RWNPTKEQISMLENLYKQGIKTPSAEEIQEITARLRVYGHIEGKNVFYWFQNHKARQRQK 84
Query: 146 QQSVS 150
Q+ S
Sbjct: 85 QKQES 89
>Medtr7g025010.1 | wuschel-related homeobox protein, putative | LC |
chr7:8283410-8286927 | 20130731
Length = 590
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSK 143
+ RW P Q++ILE IF +G P +E+I +I L + GQ+ + NV+ WFQNR++RSK
Sbjct: 45 KPRWNPKPQQIRILEAIFNSGMVNPPREEITKIREQLQEFGQVGDANVFYWFQNRKSRSK 104
Query: 144 RKQQSV 149
+K++ +
Sbjct: 105 QKKRFI 110
>Medtr5g081990.1 | wuschel-related homeobox protein | HC |
chr5:35185060-35183966 | 20130731
Length = 184
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW PT Q+++L +F AG TPS ++I++I+ LS +G+I NV+ WFQN +AR ++K
Sbjct: 33 RWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQK 92
Query: 146 QQSVS 150
++ VS
Sbjct: 93 RRKVS 97
>Medtr1g019130.2 | wuschel-related homeobox protein | HC |
chr1:5704096-5705687 | 20130731
Length = 228
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW PT Q+ ILE ++ G TP+ ++I++IT LS++G+I NV+ WFQN +AR ++K
Sbjct: 90 RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQK 149
Query: 146 QQ 147
Q+
Sbjct: 150 QK 151
>Medtr7g060630.1 | wuschel-related homeobox protein | HC |
chr7:21930278-21929162 | 20130731
Length = 206
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW+PT QL ILE ++ +G TPS +I++IT LS +G+I NV+ WFQN +AR ++K
Sbjct: 8 RWSPTTEQLMILEELYRSGIRTPSAVQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67
>Medtr4g088080.1 | wuschel homeobox protein | LC |
chr4:34693672-34695281 | 20130731
Length = 319
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSK 143
R RW P Q+ ILE I+ +GT P +++IK+I L + GQ+ +++V+ WFQNR+ RSK
Sbjct: 38 RPRWIPKPEQIHILEAIYNSGTTNPRRDEIKKIREQLEEFGQVGDSSVFYWFQNRKYRSK 97
Query: 144 RKQQSVSQPSGA 155
+ ++ G
Sbjct: 98 TNKVPYNEKPGT 109
>Medtr1g019130.1 | wuschel-related homeobox protein | HC |
chr1:5704096-5705687 | 20130731
Length = 236
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW PT Q+ ILE ++ G TP+ ++I++IT LS++G+I NV+ WFQN +AR ++K
Sbjct: 90 RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQK 149
Query: 146 QQ 147
Q+
Sbjct: 150 QK 151
>Medtr4g088070.1 | wuschel homeobox protein | LC |
chr4:34685878-34688712 | 20130731
Length = 413
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSK 143
R RW P Q++ILE I+ +G P ++IK+I L + GQI + +V+ WFQNR+++ K
Sbjct: 27 RPRWIPKPEQIRILEAIYNSGMKNPPVDEIKKIREQLQEFGQIGDASVFYWFQNRKSKGK 86
Query: 144 RKQ---------QSVSQPSGANAESEVET 163
K+ Q ++ P+ N+ ++ T
Sbjct: 87 NKKAPYPKKSKRQPIADPALNNSLPQITT 115
>Medtr5g021930.1 | wuschel-related homeobox protein | HC |
chr5:8555099-8553751 | 20130731
Length = 302
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 83 SRQRWTPTAVQLQILERIF-EAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRAR 141
S RWTPT Q++IL+ ++ G +PS E+I+ I+A L Q+G+I NV+ WFQN +AR
Sbjct: 27 SSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKAR 86
Query: 142 SKRKQQSVS 150
++K++ S
Sbjct: 87 ERQKKRFTS 95
>Medtr8g095580.1 | wuschel-related homeobox-like protein | HC |
chr8:40005406-40004827 | 20130731
Length = 165
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 97 LERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRKQQ 147
+E ++ GT TPS E+I++ITA L + G+I NV+ WFQN +AR ++K++
Sbjct: 93 VEELYRRGTRTPSAEQIQQITAQLRKIGKIEGKNVFYWFQNHKARERQKRR 143
>Medtr6g027390.1 | wuschel-related homeobox protein | HC |
chr6:9379269-9376397 | 20130731
Length = 300
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRR 139
R RWTP Q+ ILE IF +G P K++ I L + G + + NV+ WFQNRR
Sbjct: 30 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRR 85
>Medtr3g088485.1 | wuschel-related homeobox-like protein | HC |
chr3:40220146-40220726 | 20130731
Length = 163
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 97 LERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRKQQ 147
+E ++ GT TP E+I++ITA L + G+I NV+ WFQN +AR ++K++
Sbjct: 91 VEELYRRGTRTPYAEQIQQITAQLRKFGKIEGKNVFYWFQNHKARERQKRR 141
>Medtr7g086940.1 | wuschel-related homeobox protein | HC |
chr7:33813041-33816667 | 20130731
Length = 272
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRR 139
R RWTP Q+ ILE IF +G P KE+ +I L + G + + NV+ WFQNRR
Sbjct: 26 RSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRR 81