Miyakogusa Predicted Gene

Lj1g3v3205720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3205720.1 Non Characterized Hit- tr|I1N531|I1N531_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,81.48,4e-18,
,64027_g.1
         (57 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g023360.1 | F-box plant-like protein | HC | chr7:7659381-7...    91   3e-19
Medtr1g115400.1 | F-box plant-like protein | HC | chr1:52098889-...    81   2e-16

>Medtr7g023360.1 | F-box plant-like protein | HC |
           chr7:7659381-7661593 | 20130731
          Length = 401

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 45/53 (84%)

Query: 5   QELIWPSVSPIAGSFKFYKLRELWWIDSYKDEYNMDALFCFLKLCPALEQLFV 57
           +ELIWPS+ P  G F FY LRELWWID+YKDEY MDALF FLKLCP+LEQLFV
Sbjct: 274 EELIWPSICPPYGCFNFYNLRELWWIDNYKDEYCMDALFSFLKLCPSLEQLFV 326


>Medtr1g115400.1 | F-box plant-like protein | HC |
           chr1:52098889-52096685 | 20130731
          Length = 390

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 46/53 (86%)

Query: 5   QELIWPSVSPIAGSFKFYKLRELWWIDSYKDEYNMDALFCFLKLCPALEQLFV 57
           + LIWPS+SP +GSF FYKL+ELWWID++++E +++AL  FLKLCPALEQL +
Sbjct: 264 ETLIWPSISPSSGSFIFYKLKELWWIDNHENENSINALISFLKLCPALEQLVI 316