Miyakogusa Predicted Gene
- Lj1g3v3194570.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3194570.2 Non Characterized Hit- tr|Q015D3|Q015D3_OSTTA
Uncharacterized protein OS=Ostreococcus tauri
GN=Ot07g,47.31,2e-19,FAMILY NOT NAMED,NULL; no description,Mog1/PsbP,
alpha/beta/alpha sandwich; PsbP,Photosystem II PsbP,CUFF.30182.2
(128 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g023290.1 | oxygen-evolving complex/thylakoid lumenal 25.6... 160 2e-40
Medtr7g023290.2 | oxygen-evolving complex/thylakoid lumenal 25.6... 160 2e-40
Medtr1g115410.1 | photosystem II reaction center PsbP family pro... 89 7e-19
Medtr1g083110.1 | photosystem II reaction center PsbP family pro... 59 1e-09
>Medtr7g023290.1 | oxygen-evolving complex/thylakoid lumenal 25.6
kDa protein | HC | chr7:7626263-7621406 | 20130731
Length = 240
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 86/98 (87%)
Query: 31 KACGPPQQVGETLIKRVLAPPNQKTKIIEATEQDVDGKTYYRFEFIAKAPNYTRHALSTV 90
K G P+QV TLIK+VLAPPNQKTKII+ATE+++DGK YY+FEF+A+APNYTRHALS V
Sbjct: 143 KEFGSPEQVAATLIKKVLAPPNQKTKIIQATEREIDGKAYYQFEFVAQAPNYTRHALSAV 202
Query: 91 SVSNGKFYTLTTGANERRWDKMKERLQTVIESFKISNV 128
S+ NGKFYTLTTGANERRW KMK+RL T++ESF++ V
Sbjct: 203 SIGNGKFYTLTTGANERRWGKMKDRLNTIVESFQLFKV 240
>Medtr7g023290.2 | oxygen-evolving complex/thylakoid lumenal 25.6
kDa protein | HC | chr7:7626267-7621406 | 20130731
Length = 237
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 86/98 (87%)
Query: 31 KACGPPQQVGETLIKRVLAPPNQKTKIIEATEQDVDGKTYYRFEFIAKAPNYTRHALSTV 90
K G P+QV TLIK+VLAPPNQKTKII+ATE+++DGK YY+FEF+A+APNYTRHALS V
Sbjct: 140 KEFGSPEQVAATLIKKVLAPPNQKTKIIQATEREIDGKAYYQFEFVAQAPNYTRHALSAV 199
Query: 91 SVSNGKFYTLTTGANERRWDKMKERLQTVIESFKISNV 128
S+ NGKFYTLTTGANERRW KMK+RL T++ESF++ V
Sbjct: 200 SIGNGKFYTLTTGANERRWGKMKDRLNTIVESFQLFKV 237
>Medtr1g115410.1 | photosystem II reaction center PsbP family
protein | HC | chr1:52104806-52107080 | 20130731
Length = 234
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 64/98 (65%)
Query: 31 KACGPPQQVGETLIKRVLAPPNQKTKIIEATEQDVDGKTYYRFEFIAKAPNYTRHALSTV 90
+ GP ++V L+K PNQ+ I + E+ +DGK YY E++ + NY + +T+
Sbjct: 137 RDLGPMEEVITDLVKHRYTAPNQRPTIYDMQERTIDGKHYYTMEYVLTSRNYASASFTTL 196
Query: 91 SVSNGKFYTLTTGANERRWDKMKERLQTVIESFKISNV 128
++ NG++YTL GANERRW K++++L+ V +SF++ ++
Sbjct: 197 AIGNGRYYTLIVGANERRWKKVRDQLKVVADSFRLLDI 234
>Medtr1g083110.1 | photosystem II reaction center PsbP family
protein | HC | chr1:36992065-36993182 | 20130731
Length = 283
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 11 GRKYRLRVKIRCSKMSLN-RWKACGPPQQVGETLIKRVLAP---PNQKTKIIEAT--EQD 64
G L V + S ++L+ +A G P++VGE +I+ + P+ K +++++ E
Sbjct: 161 GSNGELNVSVIVSPVALDFSIEAFGSPEEVGEAVIRTITGSGQRPDVKGTLVKSSLREDT 220
Query: 65 VDGKTYYRFEFIAKAPNYTRHALSTVSVSNGKFYTLTTGANERRWDKMKERLQTVIESFK 124
V YY EF ++P++ RH + G+ +TL A E W +K T+ +SF
Sbjct: 221 VRNAKYYELEFRVESPSFRRHNVCVCCARGGRLFTLNAQAPESTWPGVKPDFYTIADSFN 280
Query: 125 IS 126
++
Sbjct: 281 LT 282