Miyakogusa Predicted Gene

Lj1g3v3194570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3194570.1 tr|Q6ZDL1|Q6ZDL1_ORYSJ Oxygen evolving complex
protein-like OS=Oryza sativa subsp. japonica
GN=P0404,60.53,2e-19,PsbP,Photosystem II PsbP, oxygen evolving
complex; no description,Mog1/PsbP, alpha/beta/alpha
sandwi,CUFF.30182.1
         (139 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g023290.1 | oxygen-evolving complex/thylakoid lumenal 25.6...   152   1e-37
Medtr7g023290.2 | oxygen-evolving complex/thylakoid lumenal 25.6...   150   5e-37

>Medtr7g023290.1 | oxygen-evolving complex/thylakoid lumenal 25.6
           kDa protein | HC | chr7:7626263-7621406 | 20130731
          Length = 240

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 93/132 (70%), Gaps = 10/132 (7%)

Query: 4   PQKHGASRSP-----RREGISFTVKAAHEPSASSAGFLSQDRPGRREVIAIGTTAPLVFL 58
           PQKHG+S S      RREGISF VKA  E S+SS      D  GRR+ IAI  TAPLVFL
Sbjct: 20  PQKHGSSSSSSSTFRRREGISFIVKAEQELSSSST-----DISGRRQAIAIAATAPLVFL 74

Query: 59  FSQNSSSFAAENKKGFLPVTDQKDGYTFIYPFGWQEVSIEGQDKVFKDVIEPLESVWASS 118
           F+Q+S SFAA+NK GF PV D+KDGY F+YPFGWQEV IEGQDKVFKDVIEPLE+V  + 
Sbjct: 75  FNQSSISFAADNKSGFQPVVDRKDGYQFVYPFGWQEVVIEGQDKVFKDVIEPLENVSVTM 134

Query: 119 TGWRNSDKKGFG 130
                 D K FG
Sbjct: 135 IPTSKQDIKEFG 146


>Medtr7g023290.2 | oxygen-evolving complex/thylakoid lumenal 25.6
           kDa protein | HC | chr7:7626267-7621406 | 20130731
          Length = 237

 Score =  150 bits (378), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 92/132 (69%), Gaps = 13/132 (9%)

Query: 4   PQKHGASRSP-----RREGISFTVKAAHEPSASSAGFLSQDRPGRREVIAIGTTAPLVFL 58
           PQKHG+S S      RREGISF VKA  E S+SS G        RR+ IAI  TAPLVFL
Sbjct: 20  PQKHGSSSSSSSTFRRREGISFIVKAEQELSSSSTG--------RRQAIAIAATAPLVFL 71

Query: 59  FSQNSSSFAAENKKGFLPVTDQKDGYTFIYPFGWQEVSIEGQDKVFKDVIEPLESVWASS 118
           F+Q+S SFAA+NK GF PV D+KDGY F+YPFGWQEV IEGQDKVFKDVIEPLE+V  + 
Sbjct: 72  FNQSSISFAADNKSGFQPVVDRKDGYQFVYPFGWQEVVIEGQDKVFKDVIEPLENVSVTM 131

Query: 119 TGWRNSDKKGFG 130
                 D K FG
Sbjct: 132 IPTSKQDIKEFG 143