Miyakogusa Predicted Gene

Lj1g3v3194560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3194560.1 Non Characterized Hit- tr|I3STQ8|I3STQ8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,Ribosomal_L23,Ribosomal protein L25/L23;
Ribosomal_L23eN,Ribosomal protein L23/L25, N-terminal;
L23_,CUFF.30185.1
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g063060.1 | 60S ribosomal protein L23a-2 | HC | chr4:23319...   191   2e-49
Medtr2g096340.1 | 60S ribosomal protein L23a-2 | HC | chr2:41153...   189   8e-49
Medtr2g096340.2 | 60S ribosomal protein L23a-2 | HC | chr2:41153...   189   8e-49
Medtr7g023260.1 | 60S ribosomal protein L23a-2 | HC | chr7:76118...   184   3e-47
Medtr4g007840.1 | 60S ribosomal protein L23a, putative | HC | ch...    74   4e-14

>Medtr4g063060.1 | 60S ribosomal protein L23a-2 | HC |
           chr4:23319050-23321520 | 20130731
          Length = 152

 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/116 (83%), Positives = 98/116 (84%)

Query: 40  RTTVTFHRPKTLTKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFXX 99
           RTTVTFHRPKT TK+RNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVF  
Sbjct: 37  RTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIV 96

Query: 100 XXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 155
                          MYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 97  DLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152


>Medtr2g096340.1 | 60S ribosomal protein L23a-2 | HC |
           chr2:41153911-41156470 | 20130731
          Length = 154

 Score =  189 bits (480), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 99/116 (85%)

Query: 40  RTTVTFHRPKTLTKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFXX 99
           RTTVTFHRPKTL+++RNPKYPRISATPRNKLDHYQILK+PLTTESAMKKIEDNNTLVF  
Sbjct: 39  RTTVTFHRPKTLSRDRNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIV 98

Query: 100 XXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 155
                          MYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 99  DLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154


>Medtr2g096340.2 | 60S ribosomal protein L23a-2 | HC |
           chr2:41153911-41156293 | 20130731
          Length = 161

 Score =  189 bits (480), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 99/116 (85%)

Query: 40  RTTVTFHRPKTLTKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFXX 99
           RTTVTFHRPKTL+++RNPKYPRISATPRNKLDHYQILK+PLTTESAMKKIEDNNTLVF  
Sbjct: 46  RTTVTFHRPKTLSRDRNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIV 105

Query: 100 XXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 155
                          MYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 106 DLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 161


>Medtr7g023260.1 | 60S ribosomal protein L23a-2 | HC |
           chr7:7611862-7614698 | 20130731
          Length = 154

 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/111 (82%), Positives = 94/111 (84%)

Query: 45  FHRPKTLTKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFXXXXXXX 104
           FHRPKTL++ERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVF       
Sbjct: 44  FHRPKTLSRERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRAD 103

Query: 105 XXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 155
                     MYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 104 KKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154


>Medtr4g007840.1 | 60S ribosomal protein L23a, putative | HC |
           chr4:1285549-1285139 | 20130731
          Length = 72

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/37 (94%), Positives = 36/37 (97%)

Query: 119 QAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 155
           QAKKVNTLIRPDGTKKAYV LTPDYDALDVANK+GII
Sbjct: 36  QAKKVNTLIRPDGTKKAYVLLTPDYDALDVANKVGII 72