Miyakogusa Predicted Gene

Lj1g3v3182490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3182490.1 Non Characterized Hit- tr|Q7VGY7|Q7VGY7_HELHP
Putative uncharacterized protein OS=Helicobacter hepat,36.76,4.4,
,gene.g34247.t1.1
         (159 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g113670.1 | hypothetical protein | LC | chr7:46848502-4684...   219   1e-57

>Medtr7g113670.1 | hypothetical protein | LC |
           chr7:46848502-46845964 | 20130731
          Length = 317

 Score =  219 bits (557), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 107/163 (65%), Positives = 125/163 (76%), Gaps = 13/163 (7%)

Query: 2   AGDPWPFRVKLTTDRMLWDSLKILHSKEFEEHILAHMNESSRKILESWIPVNILIHDVNT 61
           + D WP  +KL TD M WDSLKI  SK+FEE++L +MNESSRK LESWIP+NILI+DV+T
Sbjct: 16  SNDSWPIIIKLATDCMCWDSLKISPSKDFEEYVLEYMNESSRKALESWIPLNILIYDVDT 75

Query: 62  CETYNAKLCKKDAFWFDPMPGLGEKPKKGEECS-------------LPCYDLEKAREEFA 108
           CETY++ L KK++FWFDPMP +GEK K G+                LPCYDLEKAR+EF 
Sbjct: 76  CETYDSNLSKKESFWFDPMPLVGEKTKVGKHSFSYSSSSYEETMWELPCYDLEKARKEFF 135

Query: 109 YSIEPFRHIIRKRGLKYDQEIGLRFCGGKEMVGLEFSVLHSST 151
           YSIEPFRHIIRKR LKYDQ+IGLRFCGG   VG EFSVLHSS+
Sbjct: 136 YSIEPFRHIIRKRDLKYDQQIGLRFCGGNVTVGFEFSVLHSSS 178