Miyakogusa Predicted Gene

Lj1g3v3171150.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3171150.2 tr|B9GUA4|B9GUA4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_552845 PE=4
SV=1,38.06,0.000000000000006,seg,NULL; coiled-coil,NULL,CUFF.30144.2
         (225 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g022220.1 | fanconi-associated nuclease-like protein | HC ...    89   3e-18

>Medtr7g022220.1 | fanconi-associated nuclease-like protein | HC |
           chr7:7128425-7118967 | 20130731
          Length = 909

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 62/112 (55%), Gaps = 10/112 (8%)

Query: 1   MLSGRESLIRLIGKRRRFLSHRHSILTDPIPTPLHAVXXXXXXXXXXXXAEHTPQNDDVR 60
           +LSGRESLIR IGKRRRFL +RHSIL+DPIP                     + +ND V 
Sbjct: 2   VLSGRESLIRSIGKRRRFLPNRHSILSDPIPL------SHQQPEQPTTAGSDSLENDVVI 55

Query: 61  CPICGRTLPSNNRDINSHLDLCLSLSQSVERSSGKKXXXXXXXXXXXNFTRP 112
           CP+C  +LP +NR INSHLD CL    S  + SG K           NFTRP
Sbjct: 56  CPVCSLSLPDDNRLINSHLDSCL----SEPKRSGTKRKLTQRTLLQLNFTRP 103