Miyakogusa Predicted Gene

Lj1g3v3150030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3150030.1 Non Characterized Hit- tr|C5X8F5|C5X8F5_SORBI
Putative uncharacterized protein Sb02g032890 OS=Sorghu,61.9,8e-19,no
description,Beta-grasp domain; seg,NULL; MoaD/ThiS,Molybdopterin
synthase/thiamin biosynthesis su,CUFF.30135.1
         (73 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g032860.1 | ubiquitin-related modifier 1 | HC | chr8:12607...   116   5e-27

>Medtr8g032860.1 | ubiquitin-related modifier 1 | HC |
          chr8:12607661-12604628 | 20130731
          Length = 101

 Score =  116 bits (290), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/61 (95%), Positives = 58/61 (95%), Gaps = 2/61 (3%)

Query: 15 CDSKKIHNVNVE--QQNGEDKLTMKGLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDC 72
          CDSKKIHNVNVE  QQN EDKLTMKGLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDC
Sbjct: 15 CDSKKIHNVNVEFEQQNKEDKLTMKGLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDC 74

Query: 73 D 73
          D
Sbjct: 75 D 75