Miyakogusa Predicted Gene

Lj1g3v3137960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3137960.1 Non Characterized Hit- tr|B9F7L8|B9F7L8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa subsp,80.36,3e-18,no
description,Sterile alpha motif/pointed domain; STERILE ALPHA MOTIF
(SAM) DOMAIN-CONTAINING PROTE,CUFF.30125.1
         (249 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g021220.1 | SAM domain protein | HC | chr7:6680731-6682024...   188   4e-48
Medtr8g099820.2 | SAM domain protein | HC | chr8:40339866-403415...   135   5e-32
Medtr8g099820.1 | SAM domain protein | HC | chr8:40339866-403415...   135   5e-32
Medtr3g498865.1 | SAM domain protein | HC | chr3:45201119-452022...   129   2e-30
Medtr3g105470.1 | DNA cross-link repair protein pso2/SNM1, putat...    54   1e-07
Medtr7g107080.1 | SAM domain protein | HC | chr7:43660398-436621...    51   1e-06

>Medtr7g021220.1 | SAM domain protein | HC | chr7:6680731-6682024 |
           20130731
          Length = 245

 Score =  188 bits (478), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 136/223 (60%), Positives = 160/223 (71%), Gaps = 28/223 (12%)

Query: 42  GPPRKRQRRPSVRLGEIGDQRATGHGNDSHHTRRPTIPPWSWRIPREPSRAASKARSATN 101
            PP KRQRRPSVRLGEIG+Q    HG    H R    PPWSWR+ +E SR  SK R+ +N
Sbjct: 35  APPPKRQRRPSVRLGEIGEQ----HGTFRRHNR----PPWSWRVSKESSRN-SKPRAVSN 85

Query: 102 PVNGGEEFGNSNSR---RGKAKRGSTTKRLRSEFASRTIDEN-------FDDDHA--SPV 149
            VNG +     +     R KAKRGST KRLRS  AS+ IDEN       FD DH    P 
Sbjct: 86  LVNGVDGDDGDDFGNNPRNKAKRGST-KRLRSNHASKPIDENGSKRFKNFDHDHNPNGPT 144

Query: 150 HSVEENGLDCWNVDRSEDHRVRVSD----GVESESRERRKNEGVRSWLFELGLSRYAPMF 205
           +SV+EN  D   +DR++D+R+RV +    GVESESRERRKNEGV SWLF+LGLSRYAP+F
Sbjct: 145 YSVDEN--DFMQMDRNDDNRLRVWENDVGGVESESRERRKNEGVWSWLFDLGLSRYAPVF 202

Query: 206 EIHEVDDELLPMLTLEDLKDMGINAVGSRRKMYTAIQKLQKGF 248
           E+HEVDD+LLP+LTLEDLKDMGI+AVGSRRKMY AI+KL+KGF
Sbjct: 203 EMHEVDDDLLPLLTLEDLKDMGISAVGSRRKMYNAIEKLRKGF 245


>Medtr8g099820.2 | SAM domain protein | HC | chr8:40339866-40341595
           | 20130731
          Length = 283

 Score =  135 bits (339), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/268 (41%), Positives = 138/268 (51%), Gaps = 78/268 (29%)

Query: 46  KRQRRPSVRLGEIGDQRATGHGNDSHHTRRPTIPPWSWRIPREPSRAA---------SKA 96
           KRQRRPSVRLG+IG         DSH  R       SW++  +  R           SK 
Sbjct: 28  KRQRRPSVRLGDIGVDPPY----DSHARRNNK----SWKLSFDHQRKEKDSIASGKPSKI 79

Query: 97  RSATNPVNGGEEF-------GNSNSR--------RGKAKRGST-TKRLRSEFASRTID-- 138
           R  TN  + GE F       GN +S         +   KRGS  TKR+RS + SR  +  
Sbjct: 80  RPLTNLSSVGE-FNETLDGEGNIDSTVAIGGWKVKESKKRGSVATKRVRSNWVSRIDETG 138

Query: 139 -----------ENFDDDH--------------ASPVHSVEENGLDCWNVD-RSEDHRVRV 172
                      E+ DD +               SP+HS+E  G+D      +S DH    
Sbjct: 139 GGVVEEKYSGAEDVDDGYREFDVENSESPLKEQSPIHSMENLGIDGHRRSFKSRDH---- 194

Query: 173 SDGVE----SESRERRKN--------EGVRSWLFELGLSRYAPMFEIHEVDDELLPMLTL 220
           +DG+E    SE+ +R  N        +G+R WL  LGL RYAP+FE+HEVDDE+LPMLTL
Sbjct: 195 NDGIELSGPSENGDRNDNVGRIRFGEDGIRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTL 254

Query: 221 EDLKDMGINAVGSRRKMYTAIQKLQKGF 248
           EDLKDMGINAVGSRRK+Y AIQKL KGF
Sbjct: 255 EDLKDMGINAVGSRRKLYCAIQKLGKGF 282


>Medtr8g099820.1 | SAM domain protein | HC | chr8:40339866-40341595
           | 20130731
          Length = 283

 Score =  135 bits (339), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/268 (41%), Positives = 138/268 (51%), Gaps = 78/268 (29%)

Query: 46  KRQRRPSVRLGEIGDQRATGHGNDSHHTRRPTIPPWSWRIPREPSRAA---------SKA 96
           KRQRRPSVRLG+IG         DSH  R       SW++  +  R           SK 
Sbjct: 28  KRQRRPSVRLGDIGVDPPY----DSHARRNNK----SWKLSFDHQRKEKDSIASGKPSKI 79

Query: 97  RSATNPVNGGEEF-------GNSNSR--------RGKAKRGST-TKRLRSEFASRTID-- 138
           R  TN  + GE F       GN +S         +   KRGS  TKR+RS + SR  +  
Sbjct: 80  RPLTNLSSVGE-FNETLDGEGNIDSTVAIGGWKVKESKKRGSVATKRVRSNWVSRIDETG 138

Query: 139 -----------ENFDDDH--------------ASPVHSVEENGLDCWNVD-RSEDHRVRV 172
                      E+ DD +               SP+HS+E  G+D      +S DH    
Sbjct: 139 GGVVEEKYSGAEDVDDGYREFDVENSESPLKEQSPIHSMENLGIDGHRRSFKSRDH---- 194

Query: 173 SDGVE----SESRERRKN--------EGVRSWLFELGLSRYAPMFEIHEVDDELLPMLTL 220
           +DG+E    SE+ +R  N        +G+R WL  LGL RYAP+FE+HEVDDE+LPMLTL
Sbjct: 195 NDGIELSGPSENGDRNDNVGRIRFGEDGIRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTL 254

Query: 221 EDLKDMGINAVGSRRKMYTAIQKLQKGF 248
           EDLKDMGINAVGSRRK+Y AIQKL KGF
Sbjct: 255 EDLKDMGINAVGSRRKLYCAIQKLGKGF 282


>Medtr3g498865.1 | SAM domain protein | HC | chr3:45201119-45202207
           | 20130731
          Length = 231

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 122/226 (53%), Gaps = 48/226 (21%)

Query: 46  KRQRRPSVRLGEIGDQRATGHGNDSHHTRRPTIPPWSWRIPR-EPSRAASKARSATN--P 102
           KRQRRPSVRLG+IGDQ +     DSH  R       SWR      S   SK R  TN   
Sbjct: 30  KRQRRPSVRLGDIGDQPS-----DSHPRRSSK----SWRFGLGNVSGKPSKTRPLTNLTS 80

Query: 103 VNGGEEFGNSNSR-----RGKAKRGSTTKRLRSEFASRTIDE--------------NFD- 142
           V+  +E   +N+        K K+GS  KR RS + S  I+E              +F+ 
Sbjct: 81  VSDFDEDVETNTDGVIIGSWKVKKGS--KRPRSNWVSSRIEEGEDVDNDNEDDLYRDFEG 138

Query: 143 DDHASPVHSVEENGLDCWNVDRSEDHRVRVSDGVESESRERRKNEGVRSWLFELGLSRYA 202
           D+  S + S E  G          D   R  DG      E    +GVR WL  LGL RYA
Sbjct: 139 DNSGSRIRSSENLG----------DFDARNEDGGRGSCGE----DGVRIWLNGLGLGRYA 184

Query: 203 PMFEIHEVDDELLPMLTLEDLKDMGINAVGSRRKMYTAIQKLQKGF 248
           P+F+IHEVDDE+LP+LTLEDLKDMGINAVGSRRK+Y AIQKL KGF
Sbjct: 185 PVFQIHEVDDEVLPLLTLEDLKDMGINAVGSRRKLYCAIQKLGKGF 230


>Medtr3g105470.1 | DNA cross-link repair protein pso2/SNM1, putative
           | HC | chr3:48636150-48642452 | 20130731
          Length = 671

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%)

Query: 185 KNEGVRSWLFELGLSRYAPMFEIHEVDDELLPMLTLEDLKDMGINAVGSRRKMYTAIQKL 244
           KN  V  W+  LGL++Y  +F   EVD + L  LT EDL +MGI A+G R+K+  A+ +L
Sbjct: 179 KNSPVVEWIRGLGLAKYEEVFVREEVDWDTLQWLTEEDLLNMGITALGPRKKIVHALSEL 238

Query: 245 QKGF 248
           ++G 
Sbjct: 239 RRGI 242


>Medtr7g107080.1 | SAM domain protein | HC | chr7:43660398-43662139
           | 20130731
          Length = 241

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 175 GVESESRERR--KNEGVRSWLFELGLSRYAPMFEIHEVDDELLPMLTLEDLKDMGINAVG 232
           G+ + + ER+  +  G+  WL  LGL ++  MF+   +    L  LT++ LKDMG NAVG
Sbjct: 161 GLRASNLERKLERAGGLNKWLASLGLEQFVRMFQGKIISKYQLVNLTMKKLKDMGANAVG 220

Query: 233 SRRKMYTAI 241
            RRK+  A+
Sbjct: 221 PRRKLIHAM 229