Miyakogusa Predicted Gene

Lj1g3v3101580.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3101580.2 tr|B9N1W4|B9N1W4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_784144 PE=4
SV=1,60.26,0.0000000000001,seg,NULL,CUFF.30042.2
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g017790.1 | hypothetical protein | HC | chr7:5719358-57182...   105   2e-23
Medtr7g017790.3 | hypothetical protein | HC | chr7:5720315-57182...   105   2e-23
Medtr7g017790.2 | hypothetical protein | HC | chr7:5719326-57181...    65   2e-11

>Medtr7g017790.1 | hypothetical protein | HC | chr7:5719358-5718285
           | 20130731
          Length = 125

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 74/115 (64%), Gaps = 12/115 (10%)

Query: 23  MDSFKQIWGA-EGCSSSESGWTMYIASPMQEDDGGCSNENDGGY-HEIYGE-NRMKKKGA 79
           MDSFKQIWGA EGCSSSESGWTMYI SPMQEDD  CSNENDG + HEIYGE NR KKK  
Sbjct: 1   MDSFKQIWGAAEGCSSSESGWTMYIDSPMQEDDARCSNENDGYHRHEIYGEKNRRKKK-- 58

Query: 80  RXXXXXXXXXXXXXXXXGPV--RGQTSHGTAVS----KKEKQDHGSKCSSKKSAN 128
                            GP+  + QT++G        KK+KQDHGSK  SKK+ N
Sbjct: 59  -VDEEESDDSMASDASSGPMNYQHQTNYGRGQGKSGLKKDKQDHGSKSCSKKNGN 112


>Medtr7g017790.3 | hypothetical protein | HC | chr7:5720315-5718298
           | 20130731
          Length = 125

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 74/115 (64%), Gaps = 12/115 (10%)

Query: 23  MDSFKQIWGA-EGCSSSESGWTMYIASPMQEDDGGCSNENDGGY-HEIYGE-NRMKKKGA 79
           MDSFKQIWGA EGCSSSESGWTMYI SPMQEDD  CSNENDG + HEIYGE NR KKK  
Sbjct: 1   MDSFKQIWGAAEGCSSSESGWTMYIDSPMQEDDARCSNENDGYHRHEIYGEKNRRKKK-- 58

Query: 80  RXXXXXXXXXXXXXXXXGPV--RGQTSHGTAVS----KKEKQDHGSKCSSKKSAN 128
                            GP+  + QT++G        KK+KQDHGSK  SKK+ N
Sbjct: 59  -VDEEESDDSMASDASSGPMNYQHQTNYGRGQGKSGLKKDKQDHGSKSCSKKNGN 112


>Medtr7g017790.2 | hypothetical protein | HC | chr7:5719326-5718110
           | 20130731
          Length = 103

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 53/93 (56%), Gaps = 11/93 (11%)

Query: 44  MYIASPMQEDDGGCSNENDGGY-HEIYGE-NRMKKKGARXXXXXXXXXXXXXXXXGPV-- 99
           MYI SPMQEDD  CSNENDG + HEIYGE NR KKK                   GP+  
Sbjct: 1   MYIDSPMQEDDARCSNENDGYHRHEIYGEKNRRKKK---VDEEESDDSMASDASSGPMNY 57

Query: 100 RGQTSHGTAVS----KKEKQDHGSKCSSKKSAN 128
           + QT++G        KK+KQDHGSK  SKK+ N
Sbjct: 58  QHQTNYGRGQGKSGLKKDKQDHGSKSCSKKNGN 90