Miyakogusa Predicted Gene

Lj1g3v3053750.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3053750.2 tr|F6KSN1|F6KSN1_FRAAN MADS-1 OS=Fragaria
ananassa PE=2 SV=1,53.93,4e-19, ,CUFF.29966.2
         (89 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g016600.1 | MADS-box transcription factor | HC | chr7:5229...   154   2e-38
Medtr6g015975.1 | MADS-box transcription factor | HC | chr6:5652...   138   1e-33
Medtr3g084980.1 | MADS-box transcription factor | HC | chr3:3839...    58   2e-09
Medtr5g046830.1 | MADS-box transcription factor | HC | chr5:2052...    55   1e-08
Medtr8g097090.1 | MADS-box transcription factor | HC | chr8:3483...    53   6e-08

>Medtr7g016600.1 | MADS-box transcription factor | HC |
           chr7:5229942-5235077 | 20130731
          Length = 249

 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/89 (82%), Positives = 80/89 (89%), Gaps = 1/89 (1%)

Query: 1   MLDQLSDLQNKEQMLVEANRSLSVKLDDINSRNHYRQSWDQAGDQSMQYGGSQNAHSQGF 60
           MLDQL+DLQNKE MLVEANRSLS+KL++INSRNHYRQSW+ A DQSMQY   QNAHSQ F
Sbjct: 146 MLDQLADLQNKEHMLVEANRSLSIKLEEINSRNHYRQSWE-ASDQSMQYEAQQNAHSQSF 204

Query: 61  FQPLECNPTLQIGSDYRYNGVASDQMAAT 89
           FQ LECNPTLQIGSDYRYN VASDQ+A+T
Sbjct: 205 FQQLECNPTLQIGSDYRYNNVASDQIAST 233


>Medtr6g015975.1 | MADS-box transcription factor | HC |
           chr6:5652656-5658093 | 20130731
          Length = 250

 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 81/92 (88%), Gaps = 5/92 (5%)

Query: 1   MLDQLSDLQNKEQMLVEANRSLSVKLDDIN--SRNHYRQSWDQAGDQSMQYGGSQNAHSQ 58
           MLDQL+DLQNKE MLVEANRSLS+KL++IN  SRN YRQ+W+ AGDQSM YG +QNAHSQ
Sbjct: 146 MLDQLADLQNKEHMLVEANRSLSMKLEEININSRNQYRQTWE-AGDQSMAYG-NQNAHSQ 203

Query: 59  GFFQPLECNPTLQIGSDYRYN-GVASDQMAAT 89
            FFQPLECNPTLQIG+DYRY+  VASDQ+ AT
Sbjct: 204 SFFQPLECNPTLQIGTDYRYSPPVASDQLTAT 235


>Medtr3g084980.1 | MADS-box transcription factor | HC |
           chr3:38396688-38400340 | 20130731
          Length = 244

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 44/78 (56%), Gaps = 11/78 (14%)

Query: 1   MLDQLSDLQNKEQMLVEANRSLSVKLD--DINSRNHYRQSWDQAGDQSMQYGGSQNAHSQ 58
           MLDQL DLQ KE +L EANR+L  +++   INS      + D      M YG      +Q
Sbjct: 148 MLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAED------MGYGRHHPGQNQ 201

Query: 59  G---FFQPLECNPTLQIG 73
           G    FQP+EC PTLQIG
Sbjct: 202 GDHDVFQPIECEPTLQIG 219


>Medtr5g046830.1 | MADS-box transcription factor | HC |
           chr5:20527970-20522988 | 20130731
          Length = 172

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 6/74 (8%)

Query: 1   MLDQLSDLQNKEQMLVEANRSLSVKLDDINSRNHYRQSWDQAGDQSMQYGGSQNAH-SQG 59
           MLDQL+DLQ KE+ML+E N  L  KL++IN     + +W+ + +Q+  Y  S + H S+G
Sbjct: 75  MLDQLTDLQKKEEMLLETNNILRNKLEEINVT--LQPTWE-SREQNATY--SDHPHQSEG 129

Query: 60  FFQPLECNPTLQIG 73
           +++   CN TLQIG
Sbjct: 130 YYEKARCNRTLQIG 143


>Medtr8g097090.1 | MADS-box transcription factor | HC |
           chr8:34831053-34824990 | 20130731
          Length = 242

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 1   MLDQLSDLQNKEQMLVEANRSLSVKLDDINSRNHYRQSWDQAGDQSMQYGG-SQNAHSQG 59
           MLDQLSDLQ KE ML EANRSL  +  +    N  + +   A  + M YG         G
Sbjct: 148 MLDQLSDLQRKEHMLSEANRSLRQRQLEGYQLNQLQMN---ACVEEMGYGRHPSQTQGDG 204

Query: 60  FFQPLECNPTLQIG 73
            +Q LEC PTLQIG
Sbjct: 205 LYQQLECEPTLQIG 218