Miyakogusa Predicted Gene

Lj1g3v3028300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3028300.1 Non Characterized Hit- tr|F4Q4B9|F4Q4B9_DICFS
Putative uncharacterized protein OS=Dictyostelium
fasc,40.71,3e-19,KOW,KOW; no description,Ribosomal protein L24,
SH3-like; MITOCHONDRIAL RIBOSOMAL PROTEIN L24,Ribosom,CUFF.29937.1
         (159 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g047130.2 | 50S ribosomal L24-like protein | HC | chr1:177...   293   4e-80
Medtr1g047130.1 | 50S ribosomal L24-like protein | HC | chr1:177...   293   4e-80
Medtr2g082410.1 | 50S ribosomal L24-like protein | HC | chr2:345...    57   6e-09

>Medtr1g047130.2 | 50S ribosomal L24-like protein | HC |
           chr1:17777939-17783041 | 20130731
          Length = 159

 Score =  293 bits (751), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 142/159 (89%), Positives = 154/159 (96%)

Query: 1   MGWKAAEKLIRNWKIVRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIR+WK++RGDNVMIIRGKDKGETG+IKRV+RSQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGVIKRVVRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPIHASNVQVRDPVTGNPCKIGIKYLEDGTRVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPIHASNVQV DPVTG PCK+G KYLEDGT+VRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTARPSVLGPRDTPMDLVVEKTYDAKTGRGMPEL 159
           ILKIRTT RPSV GP+DTPM++V+EKTYD+KTGRGMPEL
Sbjct: 121 ILKIRTTPRPSVAGPKDTPMEIVLEKTYDSKTGRGMPEL 159


>Medtr1g047130.1 | 50S ribosomal L24-like protein | HC |
           chr1:17777939-17783041 | 20130731
          Length = 159

 Score =  293 bits (751), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 142/159 (89%), Positives = 154/159 (96%)

Query: 1   MGWKAAEKLIRNWKIVRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIR+WK++RGDNVMIIRGKDKGETG+IKRV+RSQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGVIKRVVRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPIHASNVQVRDPVTGNPCKIGIKYLEDGTRVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPIHASNVQV DPVTG PCK+G KYLEDGT+VRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTARPSVLGPRDTPMDLVVEKTYDAKTGRGMPEL 159
           ILKIRTT RPSV GP+DTPM++V+EKTYD+KTGRGMPEL
Sbjct: 121 ILKIRTTPRPSVAGPKDTPMEIVLEKTYDSKTGRGMPEL 159


>Medtr2g082410.1 | 50S ribosomal L24-like protein | HC |
           chr2:34557590-34560700 | 20130731
          Length = 194

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 18  GDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQGQ-GHEGGIFTVEAPIHA 76
           GD V +I G +KG+ G + ++ +  + +IV+  NL  KH+K  Q G  G I  +E PIH+
Sbjct: 76  GDTVKVISGHEKGQIGEVTKIFKHNSTIIVKDINLKTKHVKSRQEGEPGQINKIEGPIHS 135

Query: 77  SNVQVRDPVTGNPCKIGIKYLEDGTRVR 104
           SNV +         ++G K +++G +VR
Sbjct: 136 SNVMLYSKEKNVVSRVGHKVIDNGKKVR 163