Miyakogusa Predicted Gene
- Lj1g3v3028300.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3028300.1 Non Characterized Hit- tr|F4Q4B9|F4Q4B9_DICFS
Putative uncharacterized protein OS=Dictyostelium
fasc,40.71,3e-19,KOW,KOW; no description,Ribosomal protein L24,
SH3-like; MITOCHONDRIAL RIBOSOMAL PROTEIN L24,Ribosom,CUFF.29937.1
(159 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g047130.2 | 50S ribosomal L24-like protein | HC | chr1:177... 293 4e-80
Medtr1g047130.1 | 50S ribosomal L24-like protein | HC | chr1:177... 293 4e-80
Medtr2g082410.1 | 50S ribosomal L24-like protein | HC | chr2:345... 57 6e-09
>Medtr1g047130.2 | 50S ribosomal L24-like protein | HC |
chr1:17777939-17783041 | 20130731
Length = 159
Score = 293 bits (751), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 142/159 (89%), Positives = 154/159 (96%)
Query: 1 MGWKAAEKLIRNWKIVRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60
MGWKAAEKLIR+WK++RGDNVMIIRGKDKGETG+IKRV+RSQNRVIVEGKNLVKKHIKQG
Sbjct: 1 MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGVIKRVVRSQNRVIVEGKNLVKKHIKQG 60
Query: 61 QGHEGGIFTVEAPIHASNVQVRDPVTGNPCKIGIKYLEDGTRVRVSRGIGASGSIIPRPE 120
QGHEGGIFTVEAPIHASNVQV DPVTG PCK+G KYLEDGT+VRVSRGIGASGSIIPRPE
Sbjct: 61 QGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVSRGIGASGSIIPRPE 120
Query: 121 ILKIRTTARPSVLGPRDTPMDLVVEKTYDAKTGRGMPEL 159
ILKIRTT RPSV GP+DTPM++V+EKTYD+KTGRGMPEL
Sbjct: 121 ILKIRTTPRPSVAGPKDTPMEIVLEKTYDSKTGRGMPEL 159
>Medtr1g047130.1 | 50S ribosomal L24-like protein | HC |
chr1:17777939-17783041 | 20130731
Length = 159
Score = 293 bits (751), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 142/159 (89%), Positives = 154/159 (96%)
Query: 1 MGWKAAEKLIRNWKIVRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60
MGWKAAEKLIR+WK++RGDNVMIIRGKDKGETG+IKRV+RSQNRVIVEGKNLVKKHIKQG
Sbjct: 1 MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGVIKRVVRSQNRVIVEGKNLVKKHIKQG 60
Query: 61 QGHEGGIFTVEAPIHASNVQVRDPVTGNPCKIGIKYLEDGTRVRVSRGIGASGSIIPRPE 120
QGHEGGIFTVEAPIHASNVQV DPVTG PCK+G KYLEDGT+VRVSRGIGASGSIIPRPE
Sbjct: 61 QGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVSRGIGASGSIIPRPE 120
Query: 121 ILKIRTTARPSVLGPRDTPMDLVVEKTYDAKTGRGMPEL 159
ILKIRTT RPSV GP+DTPM++V+EKTYD+KTGRGMPEL
Sbjct: 121 ILKIRTTPRPSVAGPKDTPMEIVLEKTYDSKTGRGMPEL 159
>Medtr2g082410.1 | 50S ribosomal L24-like protein | HC |
chr2:34557590-34560700 | 20130731
Length = 194
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 18 GDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQGQ-GHEGGIFTVEAPIHA 76
GD V +I G +KG+ G + ++ + + +IV+ NL KH+K Q G G I +E PIH+
Sbjct: 76 GDTVKVISGHEKGQIGEVTKIFKHNSTIIVKDINLKTKHVKSRQEGEPGQINKIEGPIHS 135
Query: 77 SNVQVRDPVTGNPCKIGIKYLEDGTRVR 104
SNV + ++G K +++G +VR
Sbjct: 136 SNVMLYSKEKNVVSRVGHKVIDNGKKVR 163