Miyakogusa Predicted Gene

Lj1g3v3025180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3025180.1 Non Characterized Hit- tr|J3LQP0|J3LQP0_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G3,32.12,1e-18,seg,NULL; Bromodomain transcription factors and
PHD do,Bromodomain transcription factor; Bromo_TP,Br,CUFF.29931.1
         (381 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g015100.2 | bromodomain transcription factor | HC | chr7:4...   572   e-163
Medtr7g015100.1 | bromodomain transcription factor | HC | chr7:4...   572   e-163
Medtr1g102590.1 | transcription initiation factor TFIID subunit-...   196   2e-50
Medtr1g102590.2 | transcription initiation factor TFIID subunit-...   196   2e-50
Medtr3g080510.1 | bromodomain associated protein | HC | chr3:364...    96   7e-20

>Medtr7g015100.2 | bromodomain transcription factor | HC |
           chr7:4551939-4553090 | 20130731
          Length = 383

 Score =  572 bits (1475), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/384 (73%), Positives = 315/384 (82%), Gaps = 4/384 (1%)

Query: 1   MSNGGGKTGRQLEQ-PAATWRRRTVGGGDDFXXXXXXXXXXXXCESEGFPAFQQSALDAL 59
           MSNG GKTG+Q+EQ P  T RR+ VGGGD+F            CES+GF  FQQSAL+A+
Sbjct: 1   MSNGNGKTGKQIEQQPNTTCRRKRVGGGDEFAQSIAKVAVAQVCESKGFQGFQQSALEAM 60

Query: 60  SDITARFILNVGKSAHSFANLAGRSECNVFDVIQGLEDMGSAHGFGGASDVDHCLESSGV 119
           SD+TAR+I+N+GKSA+ +ANLAGR+ECNVFDVIQGLEDMGS  GF GASD+DH LE SGV
Sbjct: 61  SDVTARYIMNIGKSANCYANLAGRNECNVFDVIQGLEDMGSMQGFTGASDIDHWLEDSGV 120

Query: 120 VREIYQFVNEGEPITFAHPIPRFPVVKERVLPPSFLLKGEEPPGEHIPAWLPAFPVPQTY 179
           VREI QFVNE EP+ FAHPIP FPVVKERVLPPSFL +G+EPP EHIPAWLPAFP P+TY
Sbjct: 121 VREIVQFVNEVEPVMFAHPIPPFPVVKERVLPPSFLQRGKEPPDEHIPAWLPAFPDPETY 180

Query: 180 SESPLGNGRGTEPCASKFDQERENGNGERPLL--QQQMVSNMFEKSTVTDPADAKAKRVA 237
            +S   NGRGTEP  + F+ ERENG G+RPLL  QQQMVS MFE ST+ DPA AKAK V 
Sbjct: 181 LQSTTVNGRGTEPRTTTFEHERENGKGDRPLLNSQQQMVSTMFENSTMVDPAVAKAKIVG 240

Query: 238 TESNPFFAAPLKFEEKEVASVAPPTKLFNGVVASDNPVVENFVKNDSVSVLETFAPAIEA 297
            ESNPF AAPLK E+KEV+SVAPP K FN  V+SD PV EN ++N+  SVLETFAPAIEA
Sbjct: 241 AESNPFLAAPLKIEDKEVSSVAPPAKFFNN-VSSDTPVGENLIQNEPGSVLETFAPAIEA 299

Query: 298 MKSTCCDSKEDQTHFPVNEKPTVRFKVGIKNKFLGRSVGLIPQKEEHKKTLPWFAMEDEK 357
           + S  CDSKEDQT FPV EKPTVRFKVG KNKFLGRS+GLIPQ EEHKKTLPWFAMEDEK
Sbjct: 300 INSASCDSKEDQTKFPVKEKPTVRFKVGTKNKFLGRSIGLIPQNEEHKKTLPWFAMEDEK 359

Query: 358 DDRKRRAEKILRESLENPDQLVQL 381
           DDRKRRAEKILRESLENPDQLVQL
Sbjct: 360 DDRKRRAEKILRESLENPDQLVQL 383


>Medtr7g015100.1 | bromodomain transcription factor | HC |
           chr7:4551939-4553090 | 20130731
          Length = 383

 Score =  572 bits (1475), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/384 (73%), Positives = 315/384 (82%), Gaps = 4/384 (1%)

Query: 1   MSNGGGKTGRQLEQ-PAATWRRRTVGGGDDFXXXXXXXXXXXXCESEGFPAFQQSALDAL 59
           MSNG GKTG+Q+EQ P  T RR+ VGGGD+F            CES+GF  FQQSAL+A+
Sbjct: 1   MSNGNGKTGKQIEQQPNTTCRRKRVGGGDEFAQSIAKVAVAQVCESKGFQGFQQSALEAM 60

Query: 60  SDITARFILNVGKSAHSFANLAGRSECNVFDVIQGLEDMGSAHGFGGASDVDHCLESSGV 119
           SD+TAR+I+N+GKSA+ +ANLAGR+ECNVFDVIQGLEDMGS  GF GASD+DH LE SGV
Sbjct: 61  SDVTARYIMNIGKSANCYANLAGRNECNVFDVIQGLEDMGSMQGFTGASDIDHWLEDSGV 120

Query: 120 VREIYQFVNEGEPITFAHPIPRFPVVKERVLPPSFLLKGEEPPGEHIPAWLPAFPVPQTY 179
           VREI QFVNE EP+ FAHPIP FPVVKERVLPPSFL +G+EPP EHIPAWLPAFP P+TY
Sbjct: 121 VREIVQFVNEVEPVMFAHPIPPFPVVKERVLPPSFLQRGKEPPDEHIPAWLPAFPDPETY 180

Query: 180 SESPLGNGRGTEPCASKFDQERENGNGERPLL--QQQMVSNMFEKSTVTDPADAKAKRVA 237
            +S   NGRGTEP  + F+ ERENG G+RPLL  QQQMVS MFE ST+ DPA AKAK V 
Sbjct: 181 LQSTTVNGRGTEPRTTTFEHERENGKGDRPLLNSQQQMVSTMFENSTMVDPAVAKAKIVG 240

Query: 238 TESNPFFAAPLKFEEKEVASVAPPTKLFNGVVASDNPVVENFVKNDSVSVLETFAPAIEA 297
            ESNPF AAPLK E+KEV+SVAPP K FN  V+SD PV EN ++N+  SVLETFAPAIEA
Sbjct: 241 AESNPFLAAPLKIEDKEVSSVAPPAKFFNN-VSSDTPVGENLIQNEPGSVLETFAPAIEA 299

Query: 298 MKSTCCDSKEDQTHFPVNEKPTVRFKVGIKNKFLGRSVGLIPQKEEHKKTLPWFAMEDEK 357
           + S  CDSKEDQT FPV EKPTVRFKVG KNKFLGRS+GLIPQ EEHKKTLPWFAMEDEK
Sbjct: 300 INSASCDSKEDQTKFPVKEKPTVRFKVGTKNKFLGRSIGLIPQNEEHKKTLPWFAMEDEK 359

Query: 358 DDRKRRAEKILRESLENPDQLVQL 381
           DDRKRRAEKILRESLENPDQLVQL
Sbjct: 360 DDRKRRAEKILRESLENPDQLVQL 383


>Medtr1g102590.1 | transcription initiation factor TFIID
           subunit-like protein | HC | chr1:46351056-46349992 |
           20130731
          Length = 354

 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/388 (34%), Positives = 196/388 (50%), Gaps = 46/388 (11%)

Query: 3   NGGGKTGRQLEQPAAT--WRRRTVGGGDDFXXXXXXXXXXXXCESEGFPAFQQSALDALS 60
           N   KT  +   P++T    R      D+F            CE+ GF A + SAL++ S
Sbjct: 4   NEKSKTNSETLIPSSTNTITRARPSATDEFGRSTAKIAVAQLCEATGFHAVKDSALESFS 63

Query: 61  DITARFILNVGKSAHSFANLAGRSECNVFDVIQGLEDMGSAHGFGGASDVDHCLESSGVV 120
           DI  R++++  K+A  ++NLAGRS+C VFD+++  ED+ +  GF            S  +
Sbjct: 64  DIVIRYLIDFSKTAKFYSNLAGRSQCTVFDLLRAWEDLQAPLGF------------SNGM 111

Query: 121 REIYQFVNEGEPITFAHPIPRFPVVKERVLPPSFLLKGEEPPGEHIPAWLPAFPVPQTYS 180
           +EI  +        FA PIP FPV++ER + PSF+  GE PPG+HIPAWLPA P P TY 
Sbjct: 112 KEIMNYAESMPETPFAQPIPNFPVIRERKIIPSFIQMGETPPGKHIPAWLPALPDPHTYI 171

Query: 181 ESPLGNGRGTEPCASKFDQERENGNGERPLLQQQMVSNMFEKSTVTDPADAKAKRVATES 240
            +P+ + R ++P   K +Q R+    ER LL  Q    +   +   + +        T S
Sbjct: 172 HTPVWDERVSDPREDKVEQARQRRKAERSLLNLQKRLLLCNGNRNRNESTETT---TTGS 228

Query: 241 NPFFAAPLKFEEKEVASVAPPTKLFNGVVASDNPVVENFVKNDSVSVLETFAPAIEAM-- 298
           +P         +++VA    P KL         P+V+     D VSVLE FAPAIE +  
Sbjct: 229 DP---------DEDVAPAVLPVKL---------PIVD----GDRVSVLEAFAPAIEKLGG 266

Query: 299 KSTCCDSKE----DQTHFP-VNEKPTVRFKVGIKNKFLGRSVGLIPQKEEHKKTLPWFAM 353
               CD  +    ++T  P    +PTV FK     KF+G S+    +K +   T+     
Sbjct: 267 GGVLCDDDDEIDGEKTVIPAATARPTVHFKFKSGKKFIGESLDDRNKKRDALHTIFLVGR 326

Query: 354 EDEKDDRKRRAEKILRESLENPDQLVQL 381
           EDE+DD+KRRAE ILR+S+EN  +L  L
Sbjct: 327 EDERDDKKRRAEYILRQSMENRQELTLL 354


>Medtr1g102590.2 | transcription initiation factor TFIID
           subunit-like protein | HC | chr1:46351056-46349992 |
           20130731
          Length = 354

 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/388 (34%), Positives = 196/388 (50%), Gaps = 46/388 (11%)

Query: 3   NGGGKTGRQLEQPAAT--WRRRTVGGGDDFXXXXXXXXXXXXCESEGFPAFQQSALDALS 60
           N   KT  +   P++T    R      D+F            CE+ GF A + SAL++ S
Sbjct: 4   NEKSKTNSETLIPSSTNTITRARPSATDEFGRSTAKIAVAQLCEATGFHAVKDSALESFS 63

Query: 61  DITARFILNVGKSAHSFANLAGRSECNVFDVIQGLEDMGSAHGFGGASDVDHCLESSGVV 120
           DI  R++++  K+A  ++NLAGRS+C VFD+++  ED+ +  GF            S  +
Sbjct: 64  DIVIRYLIDFSKTAKFYSNLAGRSQCTVFDLLRAWEDLQAPLGF------------SNGM 111

Query: 121 REIYQFVNEGEPITFAHPIPRFPVVKERVLPPSFLLKGEEPPGEHIPAWLPAFPVPQTYS 180
           +EI  +        FA PIP FPV++ER + PSF+  GE PPG+HIPAWLPA P P TY 
Sbjct: 112 KEIMNYAESMPETPFAQPIPNFPVIRERKIIPSFIQMGETPPGKHIPAWLPALPDPHTYI 171

Query: 181 ESPLGNGRGTEPCASKFDQERENGNGERPLLQQQMVSNMFEKSTVTDPADAKAKRVATES 240
            +P+ + R ++P   K +Q R+    ER LL  Q    +   +   + +        T S
Sbjct: 172 HTPVWDERVSDPREDKVEQARQRRKAERSLLNLQKRLLLCNGNRNRNESTETT---TTGS 228

Query: 241 NPFFAAPLKFEEKEVASVAPPTKLFNGVVASDNPVVENFVKNDSVSVLETFAPAIEAM-- 298
           +P         +++VA    P KL         P+V+     D VSVLE FAPAIE +  
Sbjct: 229 DP---------DEDVAPAVLPVKL---------PIVD----GDRVSVLEAFAPAIEKLGG 266

Query: 299 KSTCCDSKE----DQTHFP-VNEKPTVRFKVGIKNKFLGRSVGLIPQKEEHKKTLPWFAM 353
               CD  +    ++T  P    +PTV FK     KF+G S+    +K +   T+     
Sbjct: 267 GGVLCDDDDEIDGEKTVIPAATARPTVHFKFKSGKKFIGESLDDRNKKRDALHTIFLVGR 326

Query: 354 EDEKDDRKRRAEKILRESLENPDQLVQL 381
           EDE+DD+KRRAE ILR+S+EN  +L  L
Sbjct: 327 EDERDDKKRRAEYILRQSMENRQELTLL 354


>Medtr3g080510.1 | bromodomain associated protein | HC |
           chr3:36430247-36427134 | 20130731
          Length = 318

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 43  CESEGFPAFQQSALDALSDITARFILNVGKSAHSFANLAGRSECNVFDVIQGLEDMGSAH 102
           C S G+   + +AL+AL+++T ++I  + +SA SFAN + R+E N FD+I G+ D+ S  
Sbjct: 55  CRSVGYKRSKFNALEALTNVTTKYIEAIARSAASFANASNRTESNFFDLINGIHDLCSVR 114

Query: 103 GFGGASDVDHC-LESSGVVREIYQFVNEGEPITFAHPIP-------RFPVVKERVLPPSF 154
           GF G S      L  S  ++EI  FV     + F+ PIP       + P +      P +
Sbjct: 115 GFTGGSKTHKSNLLKSAALKEIVDFVKFSNQVPFSKPIPSKNVCGSQNPEITIESGTPIY 174

Query: 155 LLKGEEPPGEHIPAWLPAFPVPQTYSESPL 184
             +  +  G HIP WLP FP    Y +  L
Sbjct: 175 CSENTKTQGLHIPRWLPDFPSESLYKKRDL 204