Miyakogusa Predicted Gene

Lj1g3v3022270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3022270.1 Non Characterized Hit- tr|K3XYP6|K3XYP6_SETIT
Uncharacterized protein OS=Setaria italica GN=Si007054,70.77,4e-19,
,CUFF.29886.1
         (65 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g096310.1 | nucleotide-sugar transporter family protein | ...   112   1e-25
Medtr2g038410.1 | nucleotide-sugar transporter family protein | ...    79   1e-15

>Medtr5g096310.1 | nucleotide-sugar transporter family protein |
          HC | chr5:42116173-42113242 | 20130731
          Length = 385

 Score =  112 bits (279), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/64 (79%), Positives = 55/64 (85%)

Query: 1  MGWLDSLFGEGRKVIKRKDSDAGEAGRALEEIRGSLHNELRTSEGAKRQQQRYCGPTVAL 60
          MG LDSL G+GRK IKRKDSDAGE G+ALEE+R SL+NELRTSEGAKRQQQRYCGP VAL
Sbjct: 1  MGLLDSLLGDGRKFIKRKDSDAGETGKALEELRSSLYNELRTSEGAKRQQQRYCGPVVAL 60

Query: 61 ILGF 64
             F
Sbjct: 61 SFNF 64


>Medtr2g038410.1 | nucleotide-sugar transporter family protein |
          HC | chr2:16742119-16745970 | 20130731
          Length = 381

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 42/56 (75%)

Query: 10 EGRKVIKRKDSDAGEAGRALEEIRGSLHNELRTSEGAKRQQQRYCGPTVALILGFF 65
          + RK++KRKDSDAGE GRALE++R SL N+   S+G+KRQQ+R CGP  AL   F 
Sbjct: 9  DARKILKRKDSDAGEKGRALEDLRASLFNQFNFSDGSKRQQRRICGPATALTFNFL 64