Miyakogusa Predicted Gene

Lj1g3v3006720.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3006720.1 Non Characterized Hit- tr|K4B739|K4B739_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,47.73,3e-18,U1-like zinc finger,Zinc finger, U1-type; zinc
finger,Zinc finger, C2H2-like; ZINC FINGER PROTEIN-RE,CUFF.29853.1
         (332 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g023750.1 | C2H2 type zf-met: zinc-finger protein | HC | c...    90   4e-18
Medtr5g097950.1 | C2H2 type zinc-finger protein | LC | chr5:4289...    69   7e-12
Medtr5g097950.2 | C2H2 type zinc-finger protein | LC | chr5:4289...    68   1e-11

>Medtr3g023750.1 | C2H2 type zf-met: zinc-finger protein | HC |
           chr3:7230508-7224689 | 20130731
          Length = 393

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query: 179 NGXXXXXXXXXXXXTVQPAYCEVCKTECTSKDVLDQHKLGKRHKKNLEK-------LRES 231
           NG              Q  +CEVCK  C S+D+   H  GK+H K LEK       +  S
Sbjct: 243 NGVGPFQKAAKKIKVAQSVWCEVCKINCNSRDIYITHLAGKKHLKTLEKQSNPKIDVGTS 302

Query: 232 LKPAQVHPSGSSNPVIGPREQNDXXXXXXXXXXXXXIETPEDLEIKKKKVLEGGAAANAV 291
                   + + N +IGP+E+                    D+E KK+KV+EGGAA + +
Sbjct: 303 GTSTATTTAIAPNTLIGPQEKPGTDQPKPKKASEL------DIETKKRKVVEGGAAVDGI 356

Query: 292 RTCAVCNVVCNSETVYNYHIAG 313
           + C +CNVVCNS+TV+N+H+ G
Sbjct: 357 KMCTLCNVVCNSQTVFNFHLVG 378



 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 23/115 (20%)

Query: 199 CEVCKTECTSKDVLDQHKLGKRHKKNLEKLRESLKPAQVHPSGSSNPVIGPREQNDXXXX 258
           CEVCK +  SKD  D H  GK+HKKNL+         Q +P+ +S+  +    Q D    
Sbjct: 127 CEVCKVDVNSKDSYDSHIAGKKHKKNLQ--------IQTNPTIASHANV----QTDTSSI 174

Query: 259 XXXXXXXXXIETPEDLEIKKKKVLEGGAAANAVRTCAVCNVVCNSETVYNYHIAG 313
                     +  E     KK+V       ++   C+ CNV+C S+  Y  H+AG
Sbjct: 175 QGQALIGPVAKQSEP----KKQV-------DSATVCSTCNVLCTSQDAYIKHLAG 218


>Medtr5g097950.1 | C2H2 type zinc-finger protein | LC |
           chr5:42895876-42891635 | 20130731
          Length = 532

 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 25/126 (19%)

Query: 198 YCEVCKTECTSKDVLDQHKLGKRHKKNLEKLRESLKPAQVHPSGSSNPVIG--------- 248
           +CE CK  C S+D    H  GK+H +NLEKL              SNP +G         
Sbjct: 405 WCEFCKINCNSRDSYTAHISGKKHLRNLEKL--------------SNPKVGVGSGATPTT 450

Query: 249 -PREQNDXXXXXXXXXXXXXIETPE-DLEIKKKKVLEGGAAANAVRTCAVCNVVCNSETV 306
                                + PE D+E +K+K +E GAA N ++ C +CNVVCNS+  
Sbjct: 451 TATITIIETQEKPDSDNLKAKQVPELDIEAEKRKAVERGAAVNDIKMCTLCNVVCNSQAN 510

Query: 307 YNYHIA 312
            N H++
Sbjct: 511 LNTHLS 516


>Medtr5g097950.2 | C2H2 type zinc-finger protein | LC |
           chr5:42894518-42891635 | 20130731
          Length = 496

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 25/129 (19%)

Query: 195 QPAYCEVCKTECTSKDVLDQHKLGKRHKKNLEKLRESLKPAQVHPSGSSNPVIG------ 248
           +  +CE CK  C S+D    H  GK+H +NLEKL              SNP +G      
Sbjct: 366 ESVWCEFCKINCNSRDSYTAHISGKKHLRNLEKL--------------SNPKVGVGSGAT 411

Query: 249 ----PREQNDXXXXXXXXXXXXXIETPE-DLEIKKKKVLEGGAAANAVRTCAVCNVVCNS 303
                                   + PE D+E +K+K +E GAA N ++ C +CNVVCNS
Sbjct: 412 PTTTATITIIETQEKPDSDNLKAKQVPELDIEAEKRKAVERGAAVNDIKMCTLCNVVCNS 471

Query: 304 ETVYNYHIA 312
           +   N H++
Sbjct: 472 QANLNTHLS 480