Miyakogusa Predicted Gene

Lj1g3v3006710.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3006710.1 Non Characterized Hit- tr|A5B0X8|A5B0X8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.07,1e-18,C2H2 and C2HC zinc fingers,NULL;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; U1-like zinc finger,Zinc
fing,CUFF.29852.1
         (368 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g023750.1 | C2H2 type zf-met: zinc-finger protein | HC | c...    83   4e-16
Medtr5g097950.2 | C2H2 type zinc-finger protein | LC | chr5:4289...    54   2e-07
Medtr5g097950.1 | C2H2 type zinc-finger protein | LC | chr5:4289...    54   2e-07

>Medtr3g023750.1 | C2H2 type zf-met: zinc-finger protein | HC |
           chr3:7230508-7224689 | 20130731
          Length = 393

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 19/154 (12%)

Query: 212 EIEIVQSAYNCEVCKIDCRTKQNLDQHXXXXXXXXXXXXXTQDHPSGSSNPAIELEKLTQ 271
           +I++ QS + CEVCKI+C ++     H                     SNP I++     
Sbjct: 254 KIKVAQSVW-CEVCKINCNSRDIYITHLAGKKHLKTLEK--------QSNPKIDVGTSGT 304

Query: 272 VHPSG---SSSPAIGPQQEQNDEGKSIGGHKKKRKNETPEDLERKKKKLIECGTVADAVR 328
              +    + +  IGPQ++        G  + K K  +  D+E KK+K++E G   D ++
Sbjct: 305 STATTTAIAPNTLIGPQEKP-------GTDQPKPKKASELDIETKKRKVVEGGAAVDGIK 357

Query: 329 TCDICNVVCNNESVYKYHLAGKKHVAMVKKASDL 362
            C +CNVVCN+++V+ +HL G+KH AMVKKA  +
Sbjct: 358 MCTLCNVVCNSQTVFNFHLVGQKHAAMVKKAGSV 391


>Medtr5g097950.2 | C2H2 type zinc-finger protein | LC |
           chr5:42894518-42891635 | 20130731
          Length = 496

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 19/149 (12%)

Query: 212 EIEIVQSAYNCEVCKIDCRTKQNLDQHXXXXXXXXXXXXXTQDHPSGSSNPAIELEKLTQ 271
           +I++ +S + CE CKI+C ++ +   H                     SNP + +     
Sbjct: 361 KIKVAESVW-CEFCKINCNSRDSYTAHISGKKHLRNLEKL--------SNPKVGVG---- 407

Query: 272 VHPSGSSSPAIGPQQEQNDEGKSIGGHKKKRKNETPE-DLERKKKKLIECGTVADAVRTC 330
              SG++            + K    + K +  + PE D+E +K+K +E G   + ++ C
Sbjct: 408 ---SGATPTTTATITIIETQEKPDSDNLKAK--QVPELDIEAEKRKAVERGAAVNDIKMC 462

Query: 331 DICNVVCNNESVYKYHLAGKKHVAMVKKA 359
            +CNVVCN+++    HL+   H AMVKKA
Sbjct: 463 TLCNVVCNSQANLNTHLSDHNHAAMVKKA 491


>Medtr5g097950.1 | C2H2 type zinc-finger protein | LC |
           chr5:42895876-42891635 | 20130731
          Length = 532

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 302 RKNETPE-DLERKKKKLIECGTVADAVRTCDICNVVCNNESVYKYHLAGKKHVAMVKKA 359
           +  + PE D+E +K+K +E G   + ++ C +CNVVCN+++    HL+   H AMVKKA
Sbjct: 469 KAKQVPELDIEAEKRKAVERGAAVNDIKMCTLCNVVCNSQANLNTHLSDHNHAAMVKKA 527