Miyakogusa Predicted Gene

Lj1g3v3006690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3006690.1 Non Characterized Hit- tr|K4BL51|K4BL51_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,64.44,0.00000001,Complex1_LYR_1,Complex 1 LYR
protein,CUFF.29850.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0287s0050.1 | complex 1 protein, LYR family protein | HC | ...    64   4e-11
Medtr7g012870.1 | complex 1 protein, LYR family protein | HC | c...    64   4e-11
Medtr7g083770.1 | complex 1 protein, LYR family protein | LC | c...    52   1e-07

>Medtr0287s0050.1 | complex 1 protein, LYR family protein | HC |
          scaffold0287:10572-10291 | 20130731
          Length = 93

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 5  SAAEVRTLLRSLLRVARQFPDYNIREYTKRRVVDAFRE 42
          S ++  TLLRS +RV+RQFPDYNIREYTKRR +DAFR+
Sbjct: 7  SKSQTLTLLRSFIRVSRQFPDYNIREYTKRRAIDAFRQ 44


>Medtr7g012870.1 | complex 1 protein, LYR family protein | HC |
          chr7:3635513-3635794 | 20130731
          Length = 93

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 5  SAAEVRTLLRSLLRVARQFPDYNIREYTKRRVVDAFRE 42
          S ++  TLLRS +RV+RQFPDYNIREYTKRR +DAFR+
Sbjct: 7  SKSQTLTLLRSFIRVSRQFPDYNIREYTKRRAIDAFRQ 44


>Medtr7g083770.1 | complex 1 protein, LYR family protein | LC |
          chr7:32254532-32255924 | 20130731
          Length = 132

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 27/28 (96%)

Query: 14 RSLLRVARQFPDYNIREYTKRRVVDAFR 41
          ++LLRV+RQFPDYNIRE TK+RVVDAFR
Sbjct: 55 QTLLRVSRQFPDYNIRENTKQRVVDAFR 82